ViewGene
Locus Name:
GeneID:
Location:

GeneID:4617
TrivialName: PA14_27710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27710
PAO1 Ortholog Locus:PA2817
Sequence Length:411
Protein Length:136
Start: 2403137
Stop: 2402727
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06205.1|AE004708_11 (AE004708) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 136/136 (100%), Positives = 136/136 (100%)
Sequence:
ATGGCCAACTCCTACCTCGAGCACCACCTCGCCCTGCTCCAGCACCTGCGCAACATCCTCGGCGCCCTGGGC
GAGGCCGAGCAGGTGCCGGAAGAAAACCACGGGCTGTTCCTCGAGCGTTTCGACGAACTGATGGACGAACTG
CCGCGCGACCCGGAAGGCGCCCAATACCTCGGCCAGGACCTGATTTCCCAGGTCTTCCACCGCTATCCGCAG
ATCGCCCACCTGGTACCGCGCGACCTGCTGTGGTTCTTCGGCGGCGATTGCCTGCACTTCATGCCGGACGAA
GAGATCGACCTGTTCCAGCGCCTCGACGAGCGCCGCTACGAAGCCGAAGAGCGCGGCGAAACGTTCGACTGG
AACCGCGAAAAGCAGTTGCTCGCGCTGCCCGAGGACAGCCCGCGGCACTGA
Translation:
MANSYLEHHLALLQHLRNILGALGEAEQVPEENHGLFLERFDELMDELPRDPEGAQYLGQDLISQVFHRYPQ
IAHLVPRDLLWFFGGDCLHFMPDEEIDLFQRLDERRYEAEERGETFDWNREKQLLALPEDSPRH*
AnnotationID:4623GeneID:4617
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 12:12:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2817
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9235




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26376




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4617
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6985
                           PA2817_tr
                           translation of PA2817
                           136
                           99.99
                           99.99
                           0
                           735.0
     

     
     
185469
                           gb|AAG06205.1|AE004708_11
                           (AE004708) hypothetical protein PA2817 [Pseudomonas aeruginosa PAO1]
                           136
                           99.99
                           99.99
                           0
                           735.0
     

     
     
185470
                           gb|AAN67511.1|AE016379_6
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           136
                           72.79
                           81.61
                           0
                           521.0
     

     
     
185471
                           gb|AAO57325.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           136
                           67.64
                           82.35
                           0
                           508.0
     

     






      

          
GC ORFID: 47619How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2817Glimmer Score: 

          
Start: 2550790Stop: 2551200

          
Length: 411


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2817 translation of PA2817Homolog Bit Score 287.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2658 (ORF: BLASTX 199.0), t_PA2817 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAACTCCTACCTCGAGCACCACCTCGCCCTGCTCCAGCACCTGCGCAACATCCTCGGCGCCCTGGGC 
GAGGCCGAGCAGGTGCCGGAAGAAAACCACGGGCTGTTCCTCGAGCGTTTCGACGAACTGATGGACGAACTG 
CCGCGCGACCCGGAAGGCGCCCAATACCTCGGCCAGGACCTGATTTCCCAGGTCTTCCACCGCTATCCGCAG 
ATCGCCCACCTGGTACCGCGCGACCTGCTGTGGTTCTTCGGCGGCGATTGCCTGCACTTCATGCCGGACGAA 
GAGATCGACCTGTTCCAGCGCCTCGACGAGCGCCGCTACGAAGCCGAAGAGCGCGGCGAAACGTTCGACTGG 
AACCGCGAAAAGCAGTTGCTCGCGCTGCCCGAGGACAGCCCGCGGCACTGA