ViewGene
Locus Name:
GeneID:
Location:

GeneID:4616
TrivialName: PA14_28200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28200
PAO1 Ortholog Locus:PA2775
Sequence Length:438
Protein Length:145
Start: 2441012
Stop: 2441449
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06163.1|AE004705_5 (AE004705) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 143/145 (98%), Positives = 143/145 (98%)
Sequence:
ATGACGACCTCTTCCGGTTCGCGTATCGGCGGACTTCTTCACGCTTCCCTTTTTTCCCTGCTCGGACTCGGC
CTCCTGCTCGCCGGCGGTTTCAAGACCGTCGAGCGGTACCATTTCCTGCGTACTGCGCAGGAAGCCCAGGGG
ACGGTCAGCGCCTTGAATGCCGGTGGTTCGCATCCGCAGATCGATTTCACCAGCGTTTCCGGCGAGCGGATT
TCCTATCCCCAGGGCGGCTTCATCTTCGGCTACCAGGTGGGCGAGCCGGTTCGCGTCCTCTACGAGGCTGGG
CGGCCGGCGGCCAGCGCGATAGTCGACGATGCCGGCGCGCTCTGGGGAAACAGCGCTTTCCTCTGCGGCTTC
GGCGCACTCTTCGGTATTGTCGGGTTCAGGGGATTGCTGGGCCTGCGTTCTTCCCAACCGACCTCAAAAGGA
CATTGA
Translation:
MTTSSGSRIGGLLHASLFSLLGLGLLLAGGFKTVERYHFLRTAQEAQGTVSALNAGGSHPQIDFTSVSGERI
SYPQGGFIFGYQVGEPVRVLYEAGRPAASAIVDDAGALWGNSAFLCGFGALFGIVGFRGLLGLRSSQPTSKG
H*
AnnotationID:4622GeneID:4616
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 21:09:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2775
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9233




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26374




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4616
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6984
                           PA2775_tr
                           translation of PA2775
                           145
                           98.62
                           98.62
                           0
                           734.0
     

     
     
185467
                           gb|AAG06163.1|AE004705_5
                           (AE004705) hypothetical protein PA2775 [Pseudomonas aeruginosa PAO1]
                           145
                           98.62
                           98.62
                           0
                           734.0
     

     
     
185468
                           gb|AAO53701.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           150
                           48.00
                           59.33
                           12
                           306.0
     

     






      

          
GC ORFID: 47618How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2775Glimmer Score: 

          
Start: 2512914Stop: 2512477

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2775 translation of PA2775Homolog Bit Score 287.0

          
Other Homologs:  t_PA2775 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGACCTCTTCCGGTTCGCGTATCGGCGGACTTCTTCACGCTTCCCTTTTTTCCCTGCTCGGACTCGGC 
CTCCTGCTCGCCGGCGGTTTCAAGACCGTCGAGCGGTACCATTTCCTGCGTACTGCGCAGGAAGCCCAGGGG 
ACGGTCAGCGCCTTGAATGCCGGTGGTTCGCATCCGCAGATCGATTTCACCAGCGTTTCCGGCGAGCGGATT 
TCCTATCCCCAGGGCGGCTTCATCTTCGGCTACCAGGTGGGCGAGCCGGTTCGCGTCCTCTACGAGGCTGGG 
CGGCCGGCGGCCAGCGCGATAGTCGACGATGCCGGCGCGCTCTGGGGAAACAGCGCTTTCCTCTGCGGCTTC 
GGCGCACTCTTCGGTATTGTCGGGTTCAGGGGATTGCTGGGCCTGCGTTCTTCCCAACCGACCTCAAAAGGA 
CATTGA