ViewGene
Locus Name:
GeneID:
Location:

GeneID:4614
TrivialName: PA14_62380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62380
PAO1 Ortholog Locus:PA4713
Sequence Length:450
Protein Length:149
Start: 5564938
Stop: 5564489
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08099.1|AE004885_4 (AE004885) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 146/149 (97%), Positives = 147/149 (98%)
Sequence:
ATGCTCTTCGCCCGTTTGGTTTTGCTGGTTCAGGCGCTGGTATGGGGCGCGCTGGGAGTGCTGTACTGGGTG
CGTCCCTACGAGATGGCCAATCTCAGTGGCATGCTGCTGATGGAGCCTTCGGCGGTCAGCGATGCGCGGGTG
TTCTATGGCGGCCATCAGTTCGCCCTGGCGTTGTTCCTGCTGTTCGCCCTGCGCCGGGCTTCGCTGGTGCAG
CCGGCGTTGATCCTGGTAGTGCTGCTGCAATCGATCCTGACTCTGTCGCGGCTATTGATTGCCTGGATCGAG
GGCGGGATGGAGGCCGACGGCAACCTGTTCGGCCTGCTGTTCCGCGGCGCAATGGCTGCCCTGGGGATCGCC
GCCCTGTGGTGGCTGCAACGGCGGCCGCCCCGGCTGTCGACGCCCGGCGAGAACACCGAGCGCCGCGAGGAC
GACTTCGACGGCCTGTGA
Translation:
MLFARLVLLVQALVWGALGVLYWVRPYEMANLSGMLLMEPSAVSDARVFYGGHQFALALFLLFALRRASLVQ
PALILVVLLQSILTLSRLLIAWIEGGMEADGNLFGLLFRGAMAALGIAALWWLQRRPPRLSTPGENTERRED
DFDGL*
AnnotationID:4620GeneID:4614
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 06:06:59
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4713
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9229




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26370




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4614
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6982
                           PA4713_tr
                           translation of PA4713
                           149
                           97.98
                           98.65
                           0
                           738.0
     

     
     
185404
                           gb|AAG08099.1|AE004885_4
                           (AE004885) hypothetical protein PA4713 [Pseudomonas aeruginosa PAO1]
                           149
                           97.98
                           98.65
                           0
                           738.0
     

     






      

          
GC ORFID: 47616How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4713Glimmer Score: 

          
Start: 4828618Stop: 4828169

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4713 translation of PA4713Homolog Bit Score 288.0

          
Other Homologs:  t_PA4713 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCTTCGCCCGTTTGGTTTTGCTGGTTCAGGCGCTGGTATGGGGCGCGCTGGGAGTGCTGTACTGGGTG 
CGTCCCTACGAGATGGCCAATCTCAGTGGCATGCTGCTGATGGAGCCTTCGGCGGTCAGCGATGCGCGGGTG 
TTCTATGGCGGCCATCAGTTCGCCCTGGCGTTGTTCCTGCTGTTCGCCCTGCGCCGGGCTTCGCTGGTGCAG 
CCGGCGTTGATCCTGGTAGTGCTGCTGCAATCGATCCTGACTCTGTCGCGGCTATTGATTGCCTGGATCGAG 
GGCGGGATGGAGGCCGACGGCAACCTGTTCGGCCTGCTGTTCCGCGGCGCAATGGCTGCCCTGGGGATCGCC 
GCCCTGTGGTGGCTGCAACGGCGGCCGCCCCGGCTGTCGACGCCCGGCGAGAACACCGAGCGCCGCGAGGAC 
GACTTCGACGGCCTGTGA