ViewGene
Locus Name:
GeneID:
Location:

GeneID:4613
TrivialName: PA14_21440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21440
PAO1 Ortholog Locus:PA3295
Sequence Length:438
Protein Length:145
Start: 1857908
Stop: 1858345
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06683.1|AE004751_9 (AE004751) probable HIT family protein [Pseudomonas aeruginosa PAO1]
Identities = 143/145 (98%), Positives = 144/145 (99%)
Sequence:
ATGAGTTTGCACGGCGTTTACGATTCCCAGAACATCTTCGCCAAGATCATTCGCGGCGAAGCTCCCTGCTAC
AAGGTCTACGAAGACGAGGACGTGCTCGCTTTCCTCGATCTGTTCCCGCAGTCCTACGGGCATACCCTGGTG
ATTCCCAAGCACGCCGAGGCGCGCAACCTGCTCGAGATCGATGCGCAGAACCTGGCCAAGGTCATGGCCGTG
GTCCAGCGCCTGACCCGCGCCCTGGTCGAGGAGGTGCAGCCGGACGGCGTGCAGGTCGCCCAGTTCAACGGC
GCCCCTGCCGGGCAGACGGTCTTCCACATCCATTTCCACGTCATCCCGCGCTTCAGCGGCGAGAATCTCGGC
ATCCATGCGGCGAAGCAGGGCGACCCGGAAGTGCTCGCACAACTTCAGGAGCGTTTGGCGCAGCGTCTGCAA
GGCTGA
Translation:
MSLHGVYDSQNIFAKIIRGEAPCYKVYEDEDVLAFLDLFPQSYGHTLVIPKHAEARNLLEIDAQNLAKVMAV
VQRLTRALVEEVQPDGVQVAQFNGAPAGQTVFHIHFHVIPRFSGENLGIHAAKQGDPEVLAQLQERLAQRLQ
G*
AnnotationID:4619GeneID:4613
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 07:07:20
Gene Name:
Confidence Code:3
GeneProduct:putative HIT family protein
Cell Localization:()
Synonyms:PA3295
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:putative Hit-like protein involved in cell-cycle regulation
Functional Category Confidence Code:5
COGs:cd01277,pfam01230,COG0537
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK24441.1| (AE005916) HIT family protein [Caulobacter crescentus CB15]
          Length = 144

 Score =  163 bits (413), Expect = 2e-40
 Identities = 82/144 (56%), Positives = 105/144 (72%), Gaps = 1/144 (0%)

>gb|AAL42375.1| (AE009098) HIT family protein [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 142

 Score =  144 bits (362), Expect = 2e-34
 Identities = 76/137 (55%), Positives = 92/137 (67%), Gaps = 1/137 (0%)

>dbj|BAB48208.1| (AP002995) probable Hit-like protein involved in cell-cycle
           regulation [Mesorhizobium loti]
          Length = 143

 Score =  131 bits (330), Expect = 1e-30
 Identities = 64/137 (46%), Positives = 91/137 (66%), Gaps = 1/137 (0%)








 
Structural Features:
cd01277, HINT_subgroup, HINT 
(histidine triad nucleotide-binding protein) subgroup
CD-Length = 103 residues,  99.0% aligned
Score =  145 bits (368), Expect = 2e-36

pfam01230, HIT, HIT domain. 
CD-Length = 105 residues, 100.0% aligned
Score =  109 bits (273), Expect = 2e-25
Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 1/106 (0%)

COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase 
and other HIT family hydrolases 
[Nucleotide transport and metabolism / 
Carbohydrate transport and metabolism]
CD-Length = 138 residues, 100.0% aligned
Score =  143 bits (361), Expect = 1e-35
Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 4/139 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9227




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26368




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32258




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4613_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4613
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6981
                           PA3295_tr
                           translation of PA3295
                           145
                           98.62
                           99.31
                           0
                           736.0
     

     
     
185391
                           gb|AAG06683.1|AE004751_9
                           (AE004751) probable HIT family protein [Pseudomonas aeruginosa PAO1]
                           145
                           98.62
                           99.31
                           0
                           736.0
     

     
     
185392
                           gb|AAK24441.1|
                           (AE005916) HIT family protein [Caulobacter crescentus CB15]
                           147
                           56.46
                           73.46
                           5
                           415.0
     

     
     
185393
                           gb|AAL42375.1|
                           (AE009098) HIT family protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           145
                           52.41
                           64.13
                           3
                           363.0
     

     
     
185394
                           gb|AAK87161.1|
                           (AE008063) AGR_C_2530p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           145
                           52.41
                           64.13
                           3
                           363.0
     

     






      

          
GC ORFID: 47615How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3295Glimmer Score: 

          
Start: 3096023Stop: 3095586

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3295 translation of PA3295Homolog Bit Score 288.0

          
Other Homologs:  t_PA3295 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTTGCACGGCGTTTACGATTCCCAGAACATCTTCGCCAAGATCATTCGCGGCGAAGCTCCCTGCTAC 
AAGGTCTACGAAGACGAGGACGTGCTCGCTTTCCTCGATCTGTTCCCGCAGTCCTACGGGCATACCCTGGTG 
ATTCCCAAGCACGCCGAGGCGCGCAACCTGCTCGAGATCGATGCGCAGAACCTGGCCAAGGTCATGGCCGTG 
GTCCAGCGCCTGACCCGCGCCCTGGTCGAGGAGGTGCAGCCGGACGGCGTGCAGGTCGCCCAGTTCAACGGC 
GCCCCTGCCGGGCAGACGGTCTTCCACATCCATTTCCACGTCATCCCGCGCTTCAGCGGCGAGAATCTCGGC 
ATCCATGCGGCGAAGCAGGGCGACCCGGAAGTGCTCGCACAACTTCAGGAGCGTTTGGCGCAGCGTCTGCAA 
GGCTGA