ViewGene
Locus Name:
GeneID:
Location:

GeneID:4612
TrivialName: PA14_27510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27510
PAO1 Ortholog Locus:PA2827
Sequence Length:399
Protein Length:132
Start: 2388430
Stop: 2388828
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06215.1|AE004709_8 (AE004709) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 132/132 (100%), Positives = 132/132 (100%)
Sequence:
ATGAGCAAGATCGACAAACCCCTGGACTCCTGGCGCGAGGAGTTGACCGAAGAGCAGTTCCACATCTGTCGC
CTGGGCGGTACCGAACGCGCCTTCAGTGGCGAATACCACGCCACCAAGACCCCCGGGATCTATCATTGCACC
TGCTGCGGCACGGCGTTGTTCGACTCCGACGCCAAGTACGACTCCGGCAGCGGTTGGCCGAGCTATTTCCAG
CCGGTGGACGCCGAGGCGGTCCGCGAACTGGACGACTTCAGCCACGGCATGCACCGCATCGAAGTCCGCTGC
GGCCGCTGCGATGCCCACCTGGGGCACGTCTTCCCGGATGGCCCCCGGCCCACCGGGTTGCGTTACTGCATC
AACTCGGCCTCGCTGAAGCTGGTGCCGCGGGAGAGCTAG
Translation:
MSKIDKPLDSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWPSYFQ
PVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLVPRES*
AnnotationID:4618GeneID:4612
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 19:07:45
Gene Name:
Confidence Code:3
GeneProduct:putative PilB-related protein
Cell Localization:()
Synonyms:msrB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:putative peptide methionine sulfoxide reductase
Functional Category Confidence Code:5
COGs:pfam01641
Secondary Functional Category(ies):
EC Number:1.8.4.6
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55300.1| (AE016862) PilB-related protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 131

 Score =  190 bits (483), Expect = 1e-48
 Identities = 84/131 (64%), Positives = 99/131 (75%)

>gb|AAN67492.1|AE016376_2 (AE016780) PilB-related protein [Pseudomonas putida KT2440]
          Length = 131

 Score =  184 bits (466), Expect = 1e-46
 Identities = 79/131 (60%), Positives = 97/131 (74%)

>emb|CAE35774.1| (BX640448) peptide methionine sulfoxide reductase [Bordetella
           bronchiseptica]
          Length = 133

 Score =  176 bits (445), Expect = 3e-44
 Identities = 84/131 (64%), Positives = 92/131 (70%)








 
Structural Features:
pfam01641, SelR, SelR domain.
CD-Length = 124 residues,  99.2% aligned
Score =  177 bits (451), Expect = 3e-46
Identities = 67/123 (54%), Positives = 84/123 (68%), Gaps = 1/123 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9225




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26366




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36244




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4612_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4612
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6980
                           PA2827_tr
                           translation of PA2827
                           132
                           99.99
                           99.99
                           0
                           738.0
     

     
     
185252
                           gb|AAG06215.1|AE004709_8
                           (AE004709) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           132
                           99.99
                           99.99
                           0
                           738.0
     

     
     
185253
                           gb|AAO55300.1|
                           (AE016862) PilB-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           132
                           63.63
                           75.00
                           1
                           483.0
     

     
     
185255
                           emb|CAE35774.1|
                           (BX640448) peptide methionine sulfoxide reductase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           133
                           63.15
                           69.17
                           1
                           445.0
     

     
     
185256
                           emb|CAE38634.1|
                           (BX640433) peptide methionine sulfoxide reductase [Bordetella parapertussis]
                           133
                           63.15
                           69.17
                           1
                           445.0
     

     






      

          
GC ORFID: 47614How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2827Glimmer Score: 

          
Start: 2565497Stop: 2565099

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2827 translation of PA2827Homolog Bit Score 288.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7761 (ORF: BLASTX 182.0), t_PA2827 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAGATCGACAAACCCCTGGACTCCTGGCGCGAGGAGTTGACCGAAGAGCAGTTCCACATCTGTCGC 
CTGGGCGGTACCGAACGCGCCTTCAGTGGCGAATACCACGCCACCAAGACCCCCGGGATCTATCATTGCACC 
TGCTGCGGCACGGCGTTGTTCGACTCCGACGCCAAGTACGACTCCGGCAGCGGTTGGCCGAGCTATTTCCAG 
CCGGTGGACGCCGAGGCGGTCCGCGAACTGGACGACTTCAGCCACGGCATGCACCGCATCGAAGTCCGCTGC 
GGCCGCTGCGATGCCCACCTGGGGCACGTCTTCCCGGATGGCCCCCGGCCCACCGGGTTGCGTTACTGCATC 
AACTCGGCCTCGCTGAAGCTGGTGCCGCGGGAGAGCTAG