ViewGene
Locus Name:
GeneID:
Location:

GeneID:4611
TrivialName: PA14_31640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31640
PAO1 Ortholog Locus:PA2546
Sequence Length:432
Protein Length:143
Start: 2749483
Stop: 2749914
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05934.1|AE004682_6 (AE004682) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 139/143 (97%), Positives = 142/143 (99%)
Sequence:
ATGACCATGCAACCCTTCGTCGTCGAACGTCTCGATCACATCGTCCTGCGGGTCCGCGACCTGGAACGCAGC
ATCGCGTTCTATCGCGATGTCCTCGGTTGCGTGGTGGTGAAGTGGCGCGACGACCTGGAGCTGGCCCATCTA
CGCCTGGGCACGTCGATGCTCGACCTGGTCGCGGTGTCCGGGTCGCTCGGCCGGGAGGGCGGTGCGGCGCCG
GGTGGGGAAGGGCGCAACGTCGACCATTTCTGCGTGCGCATCGAGCCGTTCGACGAGGCCGCGCTGATCGCC
CATCTCGAGGGGTTCGGCCTGGTCCCGCAGGTTCCCGCGGAAATCCGCTTCGGCGCCGAGGGCGACGGCTGG
TCGCTGTACTTCTTCGATCCGGACGGCAATCGAGTGGAGCTGAAGGGGGCGCGGGTGGACAATCCTGCCTGA
Translation:
MTMQPFVVERLDHIVLRVRDLERSIAFYRDVLGCVVVKWRDDLELAHLRLGTSMLDLVAVSGSLGREGGAAP
GGEGRNVDHFCVRIEPFDEAALIAHLEGFGLVPQVPAEIRFGAEGDGWSLYFFDPDGNRVELKGARVDNPA*
AnnotationID:4617GeneID:4611
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:20
Gene Name:
Confidence Code:3
GeneProduct:putative ring-cleaving dioxygenase
Cell Localization:()
Synonyms:PA2546
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00903
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68177.1|AE016451_1 (AE016783) ring-cleaving dioxygenase [Pseudomonas putida KT2440]
          Length = 139

 Score =  175 bits (444), Expect = 6e-44
 Identities = 84/134 (62%), Positives = 106/134 (79%), Gaps = 1/134 (0%)

>emb|CAE33805.1| (BX640447) putative dioxygenase [Bordetella bronchiseptica]
          Length = 136

 Score =  144 bits (364), Expect = 1e-34
 Identities = 72/131 (54%), Positives = 94/131 (71%), Gaps = 1/131 (0%)

>dbj|BAC61447.1| (AP005084) putative ring-cleaving dioxygenase [Vibrio
           parahaemolyticus]
          Length = 141

 Score =  120 bits (300), Expect = 3e-27
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 1/139 (0%)






 
Structural Features:
pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. 
CD-Length = 120 residues, 100.0% aligned
Score = 54.7 bits (131), Expect = 4e-09
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 13/129 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9223




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26364




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33120




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4611_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4611
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6979
                           PA2546_tr
                           translation of PA2546
                           143
                           97.20
                           99.30
                           0
                           736.0
     

     
     
185244
                           gb|AAG05934.1|AE004682_6
                           (AE004682) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
                           143
                           97.20
                           99.30
                           0
                           736.0
     

     
     
185245
                           gb|AAN68177.1|AE016451_1
                           (AE016783) ring-cleaving dioxygenase [Pseudomonas putida KT2440]
                           143
                           59.44
                           74.82
                           4
                           443.0
     

     
     
185248
                           gb|AAQ61147.1|
                           (AE016922) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           143
                           51.04
                           64.33
                           15
                           333.0
     

     
     
185246
                           emb|CAE33805.1|
                           (BX640447) putative dioxygenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           145
                           50.34
                           65.51
                           11
                           358.0
     

     






      

          
GC ORFID: 47613How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2546Glimmer Score: 

          
Start: 2204443Stop: 2204012

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2546 translation of PA2546Homolog Bit Score 288.0

          
Other Homologs:  t_PA2546 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATGCAACCCTTCGTCGTCGAACGTCTCGATCACATCGTCCTGCGGGTCCGCGACCTGGAACGCAGC 
ATCGCGTTCTATCGCGATGTCCTCGGTTGCGTGGTGGTGAAGTGGCGCGACGACCTGGAGCTGGCCCATCTA 
CGCCTGGGCACGTCGATGCTCGACCTGGTCGCGGTGTCCGGGTCGCTCGGCCGGGAGGGCGGTGCGGCGCCG 
GGTGGGGAAGGGCGCAACGTCGACCATTTCTGCGTGCGCATCGAGCCGTTCGACGAGGCCGCGCTGATCGCC 
CATCTCGAGGGGTTCGGCCTGGTCCCGCAGGTTCCCGCGGAAATCCGCTTCGGCGCCGAGGGCGACGGCTGG 
TCGCTGTACTTCTTCGATCCGGACGGCAATCGAGTGGAGCTGAAGGGGGCGCGGGTGGACAATCCTGCCTGA