ViewGene
Locus Name:
GeneID:
Location:

GeneID:461
TrivialName: PA14_58610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58610
PAO1 Ortholog Locus:PA4517
Sequence Length:1803
Protein Length:600
Start: 5221422
Stop: 5223224
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07905.1|AE004865_6 (AE004865) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 598/600 (99%), Positives = 599/600 (99%)
Sequence:
GTGTCCCCCACCCCACCACGCGTTACGCGCAATCGCATCGACTGGGCCGGCCTGGGCTGGCTGTTCCTGTTC
TTCTGGTTCTTCTCCGGTATCACCCAACTGCTCCTGCTGACCTCCGGCAACAGCGGTTTCTCCGGTTTCCGC
AACGCCATGGTGCTGAGCACCATCTGGCTTGCGCCGGTGTTACTGTTCCCGCGCTGGACCAAGCCGCTGGCC
GCCGTCATCGGGCTGGTGCTGTGGGCCGCCTCGCTGGTCGGCCTGAGCTATTTCGGCATCTATCACCAGGAA
TTTTCGCAAAGCGTGATCTTCGTGATGTTCGAGTCGAACACCGCCGAGGCCAGCGAATATTTCAGCCAGTAC
TTCAACCCCTGGATGACCCTCGGCCTGGTGCTCTACAGCCTGGTCGCCATCCTCCTCTGGCGCCGCCTGCGC
CCGGTCTACCTGCCGCGCTTCAGCGCCCTGCCGGTGGCGGTGCTGCTGATCGTCGCGACCATCGGTTATCCG
TTCTACAAGCAACTGGTCAGCCAGGGCCGGCCCTTCGACGAAGCCCTGGACAAGGTCCAGGCGCGCATGGAA
CCGGCGGTGCCCTGGCAATTGCTGATCGGCTACCAGCAATACCGCCAGCAACTGGGCAGCATGCAGGCGCTG
TTGCAAAAGAACGCGGCCCTACCGCCGCTGAAGAACCTCGTCGATGCCAATGGCGATACGCCGCGCACGCTG
GTCCTGGTGATCGGCGAATCCACGTCGCGCAAGCACATGAGCCTCTACGGCTATCCACGCGAAACGACCCCG
CAGCTGGACGCACTGAAGGCCGCGAACCGGAACCTCACGGTATTCAACAACGTGGTGGCGTCGCGGCCATAT
ACCATCGAGGTGCTGCAGCAGGTGCTAACGTTCGCTGACCAGGAGCATCCCGACCGCTTCCTCACCGATCCG
TCGCTGATGAACCTGATGAAGCAGGCCGGCTACAAAACCTTCTGGATCACCAACCAGCAGACTATGACCAAG
CGCAACACCATGCTGACGACCTTCGCCCAGCAGACCGATGCGCAGTTCTACCTGAACAACCAGCGCAGCCAG
AACGCCAGCCAGCTGGACGGCGCGGTGCTGGCGCCCTTCGCCAAGGTGCTGGACGACCCGGCGCCGAAGAAG
TTCATCGTGGTCCATCTGCTCGGCACCCACATGAACTACAAGTACCGCTATCCCGCCGACTACGCTCGCTTC
GTCGACCGCCAGGGCGCCCCGGCGGCCCTCAGCGACGACCAGGTGGAGGTCTACAACAGCTACGACAACGCC
GTGCTGTACAACGACTACGTGGTCTCCAGCCTGATCAAGGGCTTCGCCAACAGCGATCCGAACGGCTTCCTG
GTCTACCTCTCGGACCATGGCGAGGAAGTCTTCGACGAAGCCCCGCACGACCGCCTCGGCCGCAACGAAGGC
GACCCGACCCGCGGCATGTACACCGTGCCCTTCCTGGTCTGGACTTCGCCCAGCTGGCAGCAGACCCACCCA
CGCGACCTGCAGGCCCTGGTCGACCGACGCTACAGCAGCGAAGACCTGATCCATACCTGGTCCGACCTCGCC
GGCCTCAACTATGACCTCTTCGATCCGACCAAGAGCCTGGTGAGCAACGACTTCCAGCATGAAGTCCGCTGG
ATCGGCAACCCCTATGCCCACAATGGCTTGCGCGACTTCGACAAGCTGCCGCTGGACAAGGCCGACGCCGGG
CAGCAGGTCGCCCAGGCCGGACGACCCGCGCCAACGACGCCGCGCGCACCGTCCCGCCAGCCGAACGAAGGC
TGA
Translation:
MSPTPPRVTRNRIDWAGLGWLFLFFWFFSGITQLLLLTSGNSGFSGFRNAMVLSTIWLAPVLLFPRWTKPLA
AVIGLVLWAASLVGLSYFGIYHQEFSQSVIFVMFESNTAEASEYFSQYFNPWMTLGLVLYSLVAILLWRRLR
PVYLPRFSALPVAVLLIVATIGYPFYKQLVSQGRPFDEALDKVQARMEPAVPWQLLIGYQQYRQQLGSMQAL
LQKNAALPPLKNLVDANGDTPRTLVLVIGESTSRKHMSLYGYPRETTPQLDALKAANRNLTVFNNVVASRPY
TIEVLQQVLTFADQEHPDRFLTDPSLMNLMKQAGYKTFWITNQQTMTKRNTMLTTFAQQTDAQFYLNNQRSQ
NASQLDGAVLAPFAKVLDDPAPKKFIVVHLLGTHMNYKYRYPADYARFVDRQGAPAALSDDQVEVYNSYDNA
VLYNDYVVSSLIKGFANSDPNGFLVYLSDHGEEVFDEAPHDRLGRNEGDPTRGMYTVPFLVWTSPSWQQTHP
RDLQALVDRRYSSEDLIHTWSDLAGLNYDLFDPTKSLVSNDFQHEVRWIGNPYAHNGLRDFDKLPLDKADAG
QQVAQAGRPAPTTPRAPSRQPNEG*
AnnotationID:470GeneID:461
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 08:08:43
Gene Name:
Confidence Code:3
GeneProduct:putative membrane-associated, metal-dependent hydrolase
Cell Localization:()
Synonyms:PA4517
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2194,pfam00884
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68187.1|AE016451_11 (AE016783) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 584

 Score =  857 bits (2213), Expect = 0.0
 Identities = 414/580 (71%), Positives = 483/580 (83%)


>gb|AAD28716.1|AF112861_1 (AF112861) membrane protein YijP [Escherichia coli]
          Length = 577

 Score =  704 bits (1818), Expect = 0.0
 Identities = 339/556 (60%), Positives = 418/556 (75%), Gaps = 1/556 (0%)






 
Structural Features:
COG2194, Predicted membrane-associated, metal-dependent hydrolase 
CD-Length = 555 residues,  97.1% aligned
Score =  441 bits (1136), Expect = 2e-124
Identities = 187/563 (33%), Positives = 274/563 (48%), Gaps = 28/563 (4%)

pfam00884, Sulfatase
CD-Length = 329 residues,  87.2% aligned
Score =  170 bits (432), Expect = 8e-43
Identities = 89/310 (28%), Positives = 126/310 (40%), Gaps = 39/310 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31564




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:461_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:461
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
792
                           PA4517_tr
                           translation of PA4517
                           600
                           99.66
                           99.83
                           0
                           3155.0
     

     
     
34121
                           gb|AAG07905.1|AE004865_6
                           (AE004865) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           600
                           99.50
                           99.83
                           0
                           3152.0
     

     
     
34122
                           gb|AAN68187.1|AE016451_11
                           (AE016783) membrane protein, putative [Pseudomonas putida KT2440]
                           600
                           68.83
                           80.66
                           16
                           2208.0
     

     
     
34124
                           gb|AAD28716.1|AF112861_1
                           (AF112861) membrane protein YijP [Escherichia coli]
                           606
                           56.76
                           69.80
                           35
                           1815.0
     

     
     
34125
                           gb|AAP18740.1|
                           (AE016990) hypothetical protein S3714 [Shigella flexneri 2a str. 2457T]
                           606
                           56.60
                           69.47
                           35
                           1805.0
     

     






      

          
GC ORFID: 43463How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4517Glimmer Score: 

          
Start: 4485101Stop: 4486903

          
Length: 1803


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4517 translation of PA4517Homolog Bit Score 1219.0

          
Other Homologs:  t_PA4517 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCCCCACCCCACCACGCGTTACGCGCAATCGCATCGACTGGGCCGGCCTGGGCTGGCTGTTCCTGTTC 
TTCTGGTTCTTCTCCGGTATCACCCAACTGCTCCTGCTGACCTCCGGCAACAGCGGTTTCTCCGGTTTCCGC 
AACGCCATGGTGCTGAGCACCATCTGGCTTGCGCCGGTGTTACTGTTCCCGCGCTGGACCAAGCCGCTGGCC 
GCCGTCATCGGGCTGGTGCTGTGGGCCGCCTCGCTGGTCGGCCTGAGCTATTTCGGCATCTATCACCAGGAA 
TTTTCGCAAAGCGTGATCTTCGTGATGTTCGAGTCGAACACCGCCGAGGCCAGCGAATATTTCAGCCAGTAC 
TTCAACCCCTGGATGACCCTCGGCCTGGTGCTCTACAGCCTGGTCGCCATCCTCCTCTGGCGCCGCCTGCGC 
CCGGTCTACCTGCCGCGCTTCAGCGCCCTGCCGGTGGCGGTGCTGCTGATCGTCGCGACCATCGGTTATCCG 
TTCTACAAGCAACTGGTCAGCCAGGGCCGGCCCTTCGACGAAGCCCTGGACAAGGTCCAGGCGCGCATGGAA 
CCGGCGGTGCCCTGGCAATTGCTGATCGGCTACCAGCAATACCGCCAGCAACTGGGCAGCATGCAGGCGCTG 
TTGCAAAAGAACGCGGCCCTACCGCCGCTGAAGAACCTCGTCGATGCCAATGGCGATACGCCGCGCACGCTG 
GTCCTGGTGATCGGCGAATCCACGTCGCGCAAGCACATGAGCCTCTACGGCTATCCACGCGAAACGACCCCG 
CAGCTGGACGCACTGAAGGCCGCGAACCGGAACCTCACGGTATTCAACAACGTGGTGGCGTCGCGGCCATAT 
ACCATCGAGGTGCTGCAGCAGGTGCTAACGTTCGCTGACCAGGAGCATCCCGACCGCTTCCTCACCGATCCG 
TCGCTGATGAACCTGATGAAGCAGGCCGGCTACAAAACCTTCTGGATCACCAACCAGCAGACTATGACCAAG 
CGCAACACCATGCTGACGACCTTCGCCCAGCAGACCGATGCGCAGTTCTACCTGAACAACCAGCGCAGCCAG 
AACGCCAGCCAGCTGGACGGCGCGGTGCTGGCGCCCTTCGCCAAGGTGCTGGACGACCCGGCGCCGAAGAAG 
TTCATCGTGGTCCATCTGCTCGGCACCCACATGAACTACAAGTACCGCTATCCCGCCGACTACGCTCGCTTC 
GTCGACCGCCAGGGCGCCCCGGCGGCCCTCAGCGACGACCAGGTGGAGGTCTACAACAGCTACGACAACGCC 
GTGCTGTACAACGACTACGTGGTCTCCAGCCTGATCAAGGGCTTCGCCAACAGCGATCCGAACGGCTTCCTG 
GTCTACCTCTCGGACCATGGCGAGGAAGTCTTCGACGAAGCCCCGCACGACCGCCTCGGCCGCAACGAAGGC 
GACCCGACCCGCGGCATGTACACCGTGCCCTTCCTGGTCTGGACTTCGCCCAGCTGGCAGCAGACCCACCCA 
CGCGACCTGCAGGCCCTGGTCGACCGACGCTACAGCAGCGAAGACCTGATCCATACCTGGTCCGACCTCGCC 
GGCCTCAACTATGACCTCTTCGATCCGACCAAGAGCCTGGTGAGCAACGACTTCCAGCATGAAGTCCGCTGG 
ATCGGCAACCCCTATGCCCACAATGGCTTGCGCGACTTCGACAAGCTGCCGCTGGACAAGGCCGACGCCGGG 
CAGCAGGTCGCCCAGGCCGGACGACCCGCGCCAACGACGCCGCGCGCACCGTCCCGCCAGCCGAACGAAGGC 
TGA