ViewGene
Locus Name:
GeneID:
Location:

GeneID:4609
TrivialName: PA14_71200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71200
PAO1 Ortholog Locus:PA5392
Sequence Length:423
Protein Length:140
Start: 6343184
Stop: 6342762
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08777.1|AE004951_11 (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/140 (100%), Positives = 140/140 (100%)
Sequence:
ATGCCTACCCATACCCGCATTCGCATGTTCAACACCAAGGACACCTACCCCAACCAGTCCCTGGACAACGAT
CTCTGCCAGGCCGTGCGCGCCGGCAACACGGTGTACGTGCGCGGCCAGGTCGGCACCGACTTCGACGGCAAC
CTGGTCGGCCTCGGCGACCCGCGCGCCCAGGCCGAGCAGGCGATGAAGAACGTCAAGCAACTGCTGGAGGAA
GCCGGCAGCGACCTCTCGCACATCGTCAAGACCACCACCTACCTGATCGATCCGCGCTACCGCGAGCCGGTC
TATCGCGAAGTCGGCAAGTGGCTCAAAGGGGTGTTCCCGATCTCCACCGGACTGGTGGTCTCGGCCCTCGGC
CAGCCGCAGTGGCTGATGGAGATCGACGTGATCGCGGTGATTCCCGACGACTGGCAGCAATGA
Translation:
MPTHTRIRMFNTKDTYPNQSLDNDLCQAVRAGNTVYVRGQVGTDFDGNLVGLGDPRAQAEQAMKNVKQLLEE
AGSDLSHIVKTTTYLIDPRYREPVYREVGKWLKGVFPISTGLVVSALGQPQWLMEIDVIAVIPDDWQQ*
AnnotationID:4615GeneID:4609
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:58
Gene Name:
Confidence Code:3
GeneProduct:putative translation initiation inhibitor, yjgF family
Cell Localization:()
Synonyms:PA5392
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative endoribonuclease
Functional Category Confidence Code:5
COGs:COG0251,pfam01042
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE35156.1| (BX640451) putative endoribonuclease [Bordetella bronchiseptica]
          Length = 145

 Score =  270 bits (690), Expect = 1e-72
 Identities = 130/139 (93%), Positives = 134/139 (96%)

>emb|CAE44983.1| (BX640412) putative endoribonuclease [Bordetella pertussis]
          Length = 142

 Score =  268 bits (685), Expect = 4e-72
 Identities = 128/139 (92%), Positives = 133/139 (95%)

>gb|AAN69175.1|AE016551_6 (AE016787) YER057c/YjgF/UK114 family protein [Pseudomonas putida
           KT2440]
          Length = 130

 Score =  238 bits (607), Expect = 4e-63
 Identities = 112/128 (87%), Positives = 122/128 (95%)








 
Structural Features:
COG0251, TdcF, Putative translation initiation inhibitor, yjgF family 
[Translation, ribosomal structure and biogenesis]
CD-Length = 130 residues, 100.0% aligned
Score =  109 bits (273), Expect = 1e-25
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP. 
CD-Length = 120 residues,  90.0% aligned
Score = 89.5 bits (222), Expect = 1e-19
Identities = 38/108 (35%), Positives = 54/108 (50%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9219




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26360




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34704




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4609_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4609
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6977
                           PA5392_tr
                           translation of PA5392
                           140
                           99.99
                           99.99
                           0
                           739.0
     

     
     
185234
                           gb|AAG08777.1|AE004951_11
                           (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           140
                           99.99
                           99.99
                           0
                           739.0
     

     
     
185236
                           emb|CAE44983.1|
                           (BX640412) putative endoribonuclease [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           142
                           90.14
                           93.66
                           2
                           684.0
     

     
     
185235
                           emb|CAE35156.1|
                           (BX640451) putative endoribonuclease [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           145
                           89.65
                           92.41
                           5
                           689.0
     

     
     
185237
                           gb|AAN69175.1|AE016551_6
                           (AE016787) YER057c/YjgF/UK114 family protein [Pseudomonas putida KT2440]
                           140
                           81.42
                           88.57
                           10
                           606.0
     

     






      

          
GC ORFID: 47611How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5392Glimmer Score: 

          
Start: 5606873Stop: 5606451

          
Length: 423


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5392 translation of PA5392Homolog Bit Score 289.0

          
Other Homologs:  t_PA5392 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTACCCATACCCGCATTCGCATGTTCAACACCAAGGACACCTACCCCAACCAGTCCCTGGACAACGAT 
CTCTGCCAGGCCGTGCGCGCCGGCAACACGGTGTACGTGCGCGGCCAGGTCGGCACCGACTTCGACGGCAAC 
CTGGTCGGCCTCGGCGACCCGCGCGCCCAGGCCGAGCAGGCGATGAAGAACGTCAAGCAACTGCTGGAGGAA 
GCCGGCAGCGACCTCTCGCACATCGTCAAGACCACCACCTACCTGATCGATCCGCGCTACCGCGAGCCGGTC 
TATCGCGAAGTCGGCAAGTGGCTCAAAGGGGTGTTCCCGATCTCCACCGGACTGGTGGTCTCGGCCCTCGGC 
CAGCCGCAGTGGCTGATGGAGATCGACGTGATCGCGGTGATTCCCGACGACTGGCAGCAATGA