ViewGene
Locus Name:
GeneID:
Location:

GeneID:4608
TrivialName: PA14_61410
AnnotatorUID: danlee
Modification Date/Time:2006-06-04 14:02:35
LocusName:PA14_61410
PAO1 Ortholog Locus:PA4641
Sequence Length:414
Protein Length:137
Start: 5482409
Stop: 5481996
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: PA4641 [gene=PA4641] [prot=still frameshift hypothetical protein] [comment=PA4641] Length = 137 Score = 289 bits (740), Expect = 1e-079 Identities = 136/137 (99%), Positives = 136/137 (99%)
Sequence:
ATGTACGTCCAGCCCTACGTCTGCTTCAACGGCCGTTGCGAAGAGGCCCTGCGTTTCTATGAACACGCCATC
GGTGCCAGGGTGAGTTTCCTGTTCCGTTTCGACGAGGCGCCCGGTCCGGTGGTGGTGCCGGAAGGCTGGTGC
GACAAGGTGATGCACGCCAACCTGCAGATCGGCGACAGCCAGATCATGGCCTCGGACGGGCACGGGCCGGCG
TTGCAGCCGATCTCCGGGATTTCCCTTTCGCTGAATACCCGCGACCCGCAGCAGGCGCGGCGCTGCTATGAC
GCCTTGCTGGAGGACGGCGGGCGGGTCGAGCTGGAGTTGGGCAAGACCTTCTGGTCGCCCTGTTTCGGTACC
CTGGTGGACCGTTTCGGGGTGTCCTGGATGATCAATTGCGAGGCCGGCGCCTGA
Translation:
MYVQPYVCFNGRCEEALRFYEHAIGARVSFLFRFDEAPGPVVVPEGWCDKVMHANLQIGDSQIMASDGHGPA
LQPISGISLSLNTRDPQQARRCYDALLEDGGRVELELGKTFWSPCFGTLVDRFGVSWMINCEAGA*
AnnotationID:4614GeneID:4608
AnnotatorUID: danlee
Modification Date/Time: 2006-06-04 14:02:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
PA4641 [gene=PA4641] [prot=still frameshift hypothetical protein]
           [comment=PA4641]
          Length = 137

 Score =  289 bits (740), Expect = 1e-079
 Identities = 136/137 (99%), Positives = 136/137 (99%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26358




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31584




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4608_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4608
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
185232
                           emb|CAD84882.1|
                           (BX321859) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           143
                           46.15
                           58.74
                           10
                           303.0
     

     
     
185230
                           emb|CAD17752.1|
                           (AL646079) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           146
                           45.89
                           58.21
                           12
                           306.0
     

     
     
6976
                           PA1353_tr
                           translation of PA1353
                           139
                           43.16
                           58.27
                           4
                           304.0
     

     
     
185231
                           gb|AAG04742.1|AE004565_1
                           (AE004565) hypothetical protein PA1353 [Pseudomonas aeruginosa PAO1]
                           139
                           43.16
                           58.27
                           4
                           304.0
     

     
     
185233
                           gb|AAL02404.1|
                           (AY044272) unknown [Pseudomonas sp. B13]
                           138
                           39.85
                           56.52
                           2
                           280.0
     

     






      

          
GC ORFID: 47610How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4641Glimmer Score: 

          
Start: 4746089Stop: 4745676

          
Length: 414


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4641 translation of PA4641Homolog Bit Score 289.0

          
Other Homologs:  t_PA1353 (ORF: BLASTX 120.0), t_PA4641 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGTCCAGCCCTACGTCTGCTTCAACGGCCGTTGCGAAGAGGCCCTGCGTTTCTATGAACACGCCATC 
GGTGCCAGGGTGAGTTTCCTGTTCCGTTTCGACGAGGCGCCCGGTCCGGTGGTGGTGCCGGAAGGCTGGTGC 
GACAAGGTGATGCACGCCAACCTGCAGATCGGCGACAGCCAGATCATGGCCTCGGACGGGCACGGGCCGGCG 
TTGCAGCCGATCTCCGGGATTTCCCTTTCGCTGAATACCCGCGACCCGCAGCAGGCGCGGCGCTGCTATGAC 
GCCTTGCTGGAGGACGGCGGGCGGGTCGAGCTGGAGTTGGGCAAGACCTTCTGGTCGCCCTGTTTCGGTACC 
CTGGTGGACCGTTTCGGGGTGTCCTGGATGATCAATTGCGAGGCCGGCGCCTGA