ViewGene
Locus Name:
GeneID:
Location:

GeneID:4607
TrivialName: PA14_21220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21220
PAO1 Ortholog Locus:PA3309
Sequence Length:456
Protein Length:151
Start: 1836998
Stop: 1836543
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06697.1|AE004753_5 (AE004753) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/151 (100%), Positives = 151/151 (100%)
Sequence:
ATGTACGATCGCATTCTGGTAGCCGTGGACGGCAGCCCGGTCTCCGACCGCGCCCTGGAAGAGGCCATCAAG
CTGGCCGGCCTCAGCGGCGGCAAGCTGCGCGTCATCACCATCGTCGACAGCCCGCTGCGCCACCTTCCCGAC
TACGCGGTGTACTACAACCCCGAGCCGCTGCGCGAAGCCGCGCTGAAAGCCGCCGATGACGTCCTGGCCAAG
GCCCGCGAGAAGGTCGAGGCGAGCAACGTCGAAGGCGCCACCTTCGATCGCGTCTGCCAGGAGCGCGCCAGC
GAGGAAATCGCCGAGCGCATCGAGCTCGAGGCCCAGGCCAGCGATGCCGACGTGGTGGTCATGGGCACCCAT
GGTCGTCGCGGCATGCGCCGCCTGATGCTCGGCAGCGTGGCGGAAGGCCTGATCCGCGTGGCTTCGCGTCCG
GTCCTGCTGGTCCGCGACAAATAA
Translation:
MYDRILVAVDGSPVSDRALEEAIKLAGLSGGKLRVITIVDSPLRHLPDYAVYYNPEPLREAALKAADDVLAK
AREKVEASNVEGATFDRVCQERASEEIAERIELEAQASDADVVVMGTHGRRGMRRLMLGSVAEGLIRVASRP
VLLVRDK*
AnnotationID:4613GeneID:4607
AnnotatorUID: diggins
Modification Date/Time: 2006-01-18 21:09:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3309
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85417.1| (BX321861) Universal stress protein (Usp) [Nitrosomonas europaea
           ATCC 19718]
          Length = 148

 Score = 99.0 bits (245), Expect = 8e-21
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 5/149 (3%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9215




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26356




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4607
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6975
                           PA3309_tr
                           translation of PA3309
                           151
                           99.99
                           99.99
                           0
                           740.0
     

     
     
185227
                           gb|AAG06697.1|AE004753_5
                           (AE004753) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           151
                           99.99
                           99.99
                           0
                           740.0
     

     
     
185228
                           emb|CAD18712.1|
                           (AL646085) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           166
                           42.16
                           57.83
                           30
                           282.0
     

     
     
185229
                           emb|CAD13712.1|
                           (AL646057) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           172
                           37.79
                           51.74
                           27
                           256.0
     

     






      

          
GC ORFID: 47609How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3309Glimmer Score: 

          
Start: 3116933Stop: 3117388

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3309 translation of PA3309Homolog Bit Score 289.0

          
Other Homologs:  t_PA3309 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGATCGCATTCTGGTAGCCGTGGACGGCAGCCCGGTCTCCGACCGCGCCCTGGAAGAGGCCATCAAG 
CTGGCCGGCCTCAGCGGCGGCAAGCTGCGCGTCATCACCATCGTCGACAGCCCGCTGCGCCACCTTCCCGAC 
TACGCGGTGTACTACAACCCCGAGCCGCTGCGCGAAGCCGCGCTGAAAGCCGCCGATGACGTCCTGGCCAAG 
GCCCGCGAGAAGGTCGAGGCGAGCAACGTCGAAGGCGCCACCTTCGATCGCGTCTGCCAGGAGCGCGCCAGC 
GAGGAAATCGCCGAGCGCATCGAGCTCGAGGCCCAGGCCAGCGATGCCGACGTGGTGGTCATGGGCACCCAT 
GGTCGTCGCGGCATGCGCCGCCTGATGCTCGGCAGCGTGGCGGAAGGCCTGATCCGCGTGGCTTCGCGTCCG 
GTCCTGCTGGTCCGCGACAAATAA