ViewGene

Locus Name:
GeneID:
Location:

GeneID:4605
TrivialName: PA14_05210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05210
PAO1 Ortholog Locus:PA0398
Sequence Length:405
Protein Length:134
Start: 454728
Stop: 455132
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03787.1|AE004477_4 (AE004477) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/134 (100%), Positives = 134/134 (100%)
Sequence:
ATGACTCAACAGCACGACACCCATAGCAAGGCCATCGGCTACCTGCTGTGGATCTTCGGTTTCACCGGTTCG
CACCGCTTCTATTACGGCAAGCCGATCACCGGGACGATCTGGTTCTTCACCTTCGGCCTGTTCTTCATCGGC
TGGATCATCGACCTGTTCCTCATCCCGTCGATGGACCGCGAGGCCGACCGGCGCTTCCAGGGCGGCAACCTG
GACTACAACGTGGCCTGGATCCTGCTGACCTTCCTCGGCGTGCTCGGCGTGCACAGGATGTACATGGGCAAG
TGGATCACCGGGATCATCTACCTGTTCACCGGCGGCCTGTTCTTCCTCGGCGTGCTCTACGACTTCTGGACC
CTCAACGGACAGGTGTCCGAGCGCAACGGGCCGCAGCGCATCTGA
Translation:
MTQQHDTHSKAIGYLLWIFGFTGSHRFYYGKPITGTIWFFTFGLFFIGWIIDLFLIPSMDREADRRFQGGNL
DYNVAWILLTFLGVLGVHRMYMGKWITGIIYLFTGGLFFLGVLYDFWTLNGQVSERNGPQRI*
AnnotationID:4611GeneID:4605
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 07:07:32
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0398
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2314
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2314, XynA, Predicted membrane protein
CD-Length = 95 residues,  98.9% aligned
Score = 54.2 bits (130), Expect = 5e-09
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Genomic Context:
Comment:
ReferenceID:9211
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26352
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33718
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4605_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4605

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6973 PA0398_tr translation of PA0398 134 99.99 99.99 0 741.0
185222 gb|AAG03787.1|AE004477_4 (AE004477) hypothetical protein PA0398 [Pseudomonas aeruginosa PAO1] 134 99.99 99.99 0 741.0
185223 gb|AAN70656.1|AE016710_1 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 140 77.14 82.14 7 597.0
185224 gb|AAO58471.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 185 52.43 61.08 52 560.0
185225 emb|CAD74339.1| (BX294142) conserved hypothetical protein [Pirellula sp.] [Pirellula sp. 1] 170 51.17 58.82 38 486.0
GC ORFID: 47607How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0398Glimmer Score:
Start: 6256070Stop: 6256474
Length: 405
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0398 translation of PA0398Homolog Bit Score 290.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3347 (ORF: BLASTX 225.0), t_PA0398 (ORF: GLIMMER)
GC ORF Sequence
ATGACTCAACAGCACGACACCCATAGCAAGGCCATCGGCTACCTGCTGTGGATCTTCGGTTTCACCGGTTCG
CACCGCTTCTATTACGGCAAGCCGATCACCGGGACGATCTGGTTCTTCACCTTCGGCCTGTTCTTCATCGGC
TGGATCATCGACCTGTTCCTCATCCCGTCGATGGACCGCGAGGCCGACCGGCGCTTCCAGGGCGGCAACCTG
GACTACAACGTGGCCTGGATCCTGCTGACCTTCCTCGGCGTGCTCGGCGTGCACAGGATGTACATGGGCAAG
TGGATCACCGGGATCATCTACCTGTTCACCGGCGGCCTGTTCTTCCTCGGCGTGCTCTACGACTTCTGGACC
CTCAACGGACAGGTGTCCGAGCGCAACGGGCCGCAGCGCATCTGA