ViewGene
Locus Name:
GeneID:
Location:

GeneID:4604
TrivialName: PA14_00740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00740
PAO1 Ortholog Locus:PA0062
Sequence Length:417
Protein Length:138
Start: 72833
Stop: 72417
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03452.1|AE004445_13 (AE004445) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/138 (99%), Positives = 138/138 (100%)
Sequence:
ATGCGTACGCTGCTGCTTGCCGGTGGCCTGCTCGTCCTGAGCGGCTGCTCACTGCTGATGCCCACCCCCGAC
CCGAACCGCGCCTGGGTCGACCTCGATACCCAGCCCGACGCCGATCTCGCCGCCGTGGAAGTCGACGACAAG
AGCTGGGACCGCACGCGCTACTTCGAGGTCGATCCCGGCACCCGCGAACTCACGGTGCGCTACCAGTTCACC
GTCGACCCGACCAACATCGGCCCCGTGGACAGCCCGCTCTGGCGCGATTGCCAGCTCAACCTCAAGTTCAAG
GACTTCAGCGCCGGCCAGCGCTACCGCCTGGAGGCCGGGCACATCGGCTTCCGTCCCTGGGcGAAGCTCTAC
GACCAGGACAACAGGGAATTGGCGCGCGGCCGCAAGGGGCGCTGCGcgaAGGTCTGA
Translation:
MRTLLLAGGLLVLSGCSLLMPTPDPNRAWVDLDTQPDADLAAVEVDDKSWDRTRYFEVDPGTRELTVRYQFT
VDPTNIGPVDSPLWRDCQLNLKFKDFSAGQRYRLEAGHIGFRPWAKLYDQDNRELARGRKGRCAKV*
AnnotationID:4610GeneID:4604
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:48
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA0062
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65726.1|AE016198_13 (AE016774) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 137

 Score =  180 bits (456), Expect = 1e-45
 Identities = 82/137 (59%), Positives = 103/137 (75%), Gaps = 1/137 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9209




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26350




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4604
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6972
                           PA0062_tr
                           translation of PA0062
                           138
                           99.27
                           99.99
                           0
                           742.0
     

     
     
185220
                           gb|AAG03452.1|AE004445_13
                           (AE004445) hypothetical protein PA0062 [Pseudomonas aeruginosa PAO1]
                           138
                           99.27
                           99.99
                           0
                           742.0
     

     
     
185221
                           gb|AAN65726.1|AE016198_13
                           (AE016774) lipoprotein, putative [Pseudomonas putida KT2440]
                           138
                           59.42
                           74.63
                           1
                           458.0
     

     






      

          
GC ORFID: 47606How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0062Glimmer Score: 

          
Start: 5874170Stop: 5873754

          
Length: 417


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0062 translation of PA0062Homolog Bit Score 290.0

          
Other Homologs:  t_PA0062 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTACGCTGCTGCTTGCCGGTGGCCTGCTCGTCCTGAGCGGCTGCTCACTGCTGATGCCCACCCCCGAC 
CCGAACCGCGCCTGGGTCGACCTCGATACCCAGCCCGACGCCGATCTCGCCGCCGTGGAAGTCGACGACAAG 
AGCTGGGACCGCACGCGCTACTTCGAGGTCGATCCCGGCACCCGCGAACTCACGGTGCGCTACCAGTTCACC 
GTCGACCCGACCAACATCGGCCCCGTGGACAGCCCGCTCTGGCGCGATTGCCAGCTCAACCTCAAGTTCAAG 
GACTTCAGCGCCGGCCAGCGCTACCGCCTGGAGGCCGGGCACATCGGCTTCCGTCCCTGGGcGAAGCTCTAC 
GACCAGGACAACAGGGAATTGGCGCGCGGCCGCAAGGGGCGCTGCGcgaAGGTCTGA