ViewGene
Locus Name:
GeneID:
Location:

GeneID:4603
TrivialName: PA14_68490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68490
PAO1 Ortholog Locus:PA5185
Sequence Length:444
Protein Length:147
Start: 6110105
Stop: 6109662
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08570.1|AE004931_7 (AE004931) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 143/147 (97%), Positives = 146/147 (99%)
Sequence:
ATGGCGACCGCCCCGCGACCGCTGCGCGAGCAGTACCTTCATTTCCAGCCGATCACCACGCGCTGGCACGAC
AACGACATCTACGGACACGTGAACAACGTGACCTACTATGCGTTCTTCGACACGGCGGTGAATACCTACCTG
ATCGAGCGCGGCGGCCTGGATATCCAGGGCGGCGAAGTGATCGGCCTGGTGGTCAGTTCCAGTTGCGACTAT
TTCGCGCCGGTGGCCTTCCCCCAGCGGATCGAGATGGGCCTGCGGGTGGCGCGCCTGGGCAACAGCTCGGTG
CAGTACGAACTGGCCTTGTTCCTCGAAGGGGAGCGGGAGGCCTGCGCGGCCGGGCGTTTCGTGCATGTCTTC
GTGGAGCGCCGAAGCAGCCGCCCGGTGGCCATTCCGCAGGGACTACGCGATGCTCTGGCCGCGCTTCAGAGC
GCGGCCCAGTGA
Translation:
MATAPRPLREQYLHFQPITTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDY
FAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGEREACAAGRFVHVFVERRSSRPVAIPQGLRDALAALQS
AAQ*
AnnotationID:4609GeneID:4603
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 16:04:06
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA5185
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0824
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE38015.1| (BX640431) putative 4-hydroxybenzoyl-CoA thioesterase [Bordetella
           parapertussis]
          Length = 155

 Score =  164 bits (414), Expect = 2e-40
 Identities = 81/147 (55%), Positives = 101/147 (68%), Gaps = 3/147 (2%)

>emb|CAE33268.1| (BX640445) putative 4-hydroxybenzoyl-CoA thioesterase [Bordetella
           bronchiseptica]
          Length = 155

 Score =  162 bits (409), Expect = 7e-40
 Identities = 80/147 (54%), Positives = 101/147 (68%), Gaps = 3/147 (2%)








 
Structural Features:
COG0824, FcbC, Predicted thioesterase
CD-Length = 137 residues, 100.0% aligned
Score =  109 bits (273), Expect = 2e-25
Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 6/140 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9207




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26348




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34887




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4603_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4603
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6971
                           PA5185_tr
                           translation of PA5185
                           147
                           97.27
                           99.31
                           0
                           743.0
     

     
     
185213
                           gb|AAG08570.1|AE004931_7
                           (AE004931) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           147
                           97.27
                           99.31
                           0
                           743.0
     

     
     
185214
                           gb|AAN67664.1|AE016396_6
                           (AE016781) conserved hypothetical protein TIGR00051 [Pseudomonas putida KT2440]
                           152
                           60.52
                           71.05
                           7
                           478.0
     

     
     
185215
                           emb|CAE38015.1|
                           (BX640431) putative 4-hydroxybenzoyl-CoA thioesterase [Bordetella parapertussis]
                           156
                           53.84
                           66.66
                           10
                           416.0
     

     
     
185216
                           emb|CAE33268.1|
                           (BX640445) putative 4-hydroxybenzoyl-CoA thioesterase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           156
                           53.20
                           66.66
                           10
                           411.0
     

     






      

          
GC ORFID: 47605How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5185Glimmer Score: 

          
Start: 5373791Stop: 5373348

          
Length: 444


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5185 translation of PA5185Homolog Bit Score 290.0

          
Other Homologs:  t_PA5185 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGACCGCCCCGCGACCGCTGCGCGAGCAGTACCTTCATTTCCAGCCGATCACCACGCGCTGGCACGAC 
AACGACATCTACGGACACGTGAACAACGTGACCTACTATGCGTTCTTCGACACGGCGGTGAATACCTACCTG 
ATCGAGCGCGGCGGCCTGGATATCCAGGGCGGCGAAGTGATCGGCCTGGTGGTCAGTTCCAGTTGCGACTAT 
TTCGCGCCGGTGGCCTTCCCCCAGCGGATCGAGATGGGCCTGCGGGTGGCGCGCCTGGGCAACAGCTCGGTG 
CAGTACGAACTGGCCTTGTTCCTCGAAGGGGAGCGGGAGGCCTGCGCGGCCGGGCGTTTCGTGCATGTCTTC 
GTGGAGCGCCGAAGCAGCCGCCCGGTGGCCATTCCGCAGGGACTACGCGATGCTCTGGCCGCGCTTCAGAGC 
GCGGCCCAGTGA