ViewGene
Locus Name:
GeneID:
Location:

GeneID:4602
TrivialName: PA14_63050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63050
PAO1 Ortholog Locus:PA4767
Sequence Length:435
Protein Length:144
Start: 5625436
Stop: 5625002
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08153.1|AE004890_6 (AE004890) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 143/144 (99%), Positives = 143/144 (99%)
Sequence:
ATGAGCACCCATATCCAGCGTTCGGCGCTGTTGCCTTATCCCGCCCGTGCGCTGTTCGATCTGGTGAACGAC
GTGAAGCGCTATCCGGAGTTCCTGCCCTGGTGTTCGGCCAGCCAGGTCCTGGAGGAGAGCGAAAGCCTGATG
CGCGCCGAGCTGACCGTGGCCAAGGGTAGCCTCAGCCAGCGCTTCACCACCCGCAACGTGCTGGTGCCGGGA
ACTTCCATCGAGATGAACCTGGAAAACGGACCGTTCACCGAGCTGCATGGCGTCTGGCAGTTCAAGGCGCTG
GGCGAGAAGGCCTGCAAGATCACTCTCGACCTGACCTTCGATTACGCCGGGCCGCTGGTCAAGGCGACCCTC
GGGCCGCTGTTCACCCAGGCCGCCAACACCATGGTCGACGCGTTCTGCCAGCGCGCCAAGCAACTCTATGGC
TGA
Translation:
MSTHIQRSALLPYPARALFDLVNDVKRYPEFLPWCSASQVLEESESLMRAELTVAKGSLSQRFTTRNVLVPG
TSIEMNLENGPFTELHGVWQFKALGEKACKITLDLTFDYAGPLVKATLGPLFTQAANTMVDAFCQRAKQLYG
*
AnnotationID:4608GeneID:4602
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 11:11:53
Gene Name:
Confidence Code:3
GeneProduct:putative lipid transport protein
Cell Localization:()
Synonyms:yfjG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03654,COG2867
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO08894.1|AE016798_54 (AE016798) Oligoketide cyclase; Lipid transport protein [Vibrio
           vulnificus CMCP6]
          Length = 169

 Score =  142 bits (357), Expect = 7e-34
 Identities = 69/139 (49%), Positives = 95/139 (68%)

>gb|AAL21576.1| (AE008822) putative oligoketide cyclase/lipid transport protein
           [Salmonella typhimurium LT2]
          Length = 158

 Score =  129 bits (323), Expect = 6e-30
 Identities = 63/139 (45%), Positives = 90/139 (64%)

>gb|AAN81591.1|AE016764_273 (AE016764) Hypothetical protein yfjG [Escherichia coli CFT073]
          Length = 158

 Score =  127 bits (318), Expect = 2e-29
 Identities = 61/139 (43%), Positives = 89/139 (64%)






 
Structural Features:
pfam03654, ARPF, Aromatic-Rich Protein Family.
CD-Length = 143 residues, 100.0% aligned
Score =  235 bits (600), Expect = 2e-63
Identities = 84/143 (58%), Positives = 100/143 (69%)

COG2867, COG2867, Oligoketide cyclase/lipid transport protein 
[Lipid metabolism]
CD-Length = 146 residues,  97.3% aligned
Score =  195 bits (498), Expect = 1e-51
Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 1/142 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9205




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26346




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37676




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4602_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4602
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6970
                           PA4767_tr
                           translation of PA4767
                           144
                           99.30
                           99.30
                           0
                           741.0
     

     
     
185180
                           gb|AAG08153.1|AE004890_6
                           (AE004890) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           144
                           99.30
                           99.30
                           0
                           741.0
     

     
     
185181
                           gb|AAC05676.1|
                           (AF050676) unknown [Pseudomonas aeruginosa]
                           144
                           99.30
                           99.30
                           0
                           741.0
     

     
     
185183
                           gb|AAO57961.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           68.15
                           78.34
                           13
                           573.0
     

     
     
185184
                           gb|AAN03804.1|AF490983_4
                           (AF490983) 16 kDa hypothetical protein [Azotobacter vinelandii]
                           165
                           64.84
                           72.72
                           21
                           567.0
     

     






      

          
GC ORFID: 47604How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4767Glimmer Score: 

          
Start: 4889116Stop: 4888682

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4767 translation of PA4767Homolog Bit Score 290.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5471 (ORF: BLASTX 224.0), t_PA4767 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACCCATATCCAGCGTTCGGCGCTGTTGCCTTATCCCGCCCGTGCGCTGTTCGATCTGGTGAACGAC 
GTGAAGCGCTATCCGGAGTTCCTGCCCTGGTGTTCGGCCAGCCAGGTCCTGGAGGAGAGCGAAAGCCTGATG 
CGCGCCGAGCTGACCGTGGCCAAGGGTAGCCTCAGCCAGCGCTTCACCACCCGCAACGTGCTGGTGCCGGGA 
ACTTCCATCGAGATGAACCTGGAAAACGGACCGTTCACCGAGCTGCATGGCGTCTGGCAGTTCAAGGCGCTG 
GGCGAGAAGGCCTGCAAGATCACTCTCGACCTGACCTTCGATTACGCCGGGCCGCTGGTCAAGGCGACCCTC 
GGGCCGCTGTTCACCCAGGCCGCCAACACCATGGTCGACGCGTTCTGCCAGCGCGCCAAGCAACTCTATGGC 
TGA