ViewGene
Locus Name:
GeneID:
Location:

GeneID:4601
TrivialName: PA14_55520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55520
PAO1 Ortholog Locus:PA0678
Sequence Length:450
Protein Length:149
Start: 4941752
Stop: 4942201
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04067.1|AE004503_5 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 147/148 (99%), Positives = 147/148 (99%)
Sequence:
GTGAGGCGACCCCGGCAAGGCGGTTTCACCCTGATCGAACTGATGGTGGTGCTGGTAATCGTCGGCATCGCC
ACGGCGGCCATCAGCCTGAGCGCCCGCCCCGACCCGACGGGCCTGCTGCGCCAGGATGCCGCGCGCCTGGCG
CGGTTGCTGGAAATAGCCCAGGGCGAAGCACGGGTACGCGGTACGCCGATCCTCTGGCAGCCCAGCGCCAAG
GGCTATCGCTTCAGCCCGCAGGCCTATCGCGGCAAGACCGACGCCTTCGCCGCCGACACCGAATTGCGCGCG
CGCGACTGGCAGGCCGCGCCGCTGCGGGTCAGCGTGCGCCCGCCGCGACCGGTGTTGCTGGACGCCGAATGG
ATCGGCGCGCCGTTGCGGATAACGCTCTCCGACGGCCAACACAGCGTCACCGTGCTGCGCGAGGCGAACGGC
CATGTCCGGGTACACTGA
Translation:
MRRPRQGGFTLIELMVVLVIVGIATAAISLSARPDPTGLLRQDAARLARLLEIAQGEARVRGTPILWQPSAK
GYRFSPQAYRGKTDAFAADTELRARDWQAAPLRVSVRPPRPVLLDAEWIGAPLRITLSDGQHSVTVLREANG
HVRVH*
AnnotationID:4607GeneID:4601
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 14:02:21
Gene Name:
Confidence Code:3
GeneProduct:probable type II secretion system protein
Cell Localization:()
Synonyms:PA0678, hxcU
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15134




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26344




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4601
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6969
                           PA0678_tr
                           translation of PA0678
                           149
                           98.65
                           98.65
                           0
                           741.0
     

     
     
185179
                           gb|AAG04067.1|AE004503_5
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           149
                           97.98
                           98.65
                           0
                           738.0
     

     






      

          
GC ORFID: 47603How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0678Glimmer Score: 

          
Start: 12155Stop: 11706

          
Length: 450


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0678 translation of PA0678Homolog Bit Score 290.0

          
Other Homologs:  t_PA0678 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGGCGACCCCGGCAAGGCGGTTTCACCCTGATCGAACTGATGGTGGTGCTGGTAATCGTCGGCATCGCC 
ACGGCGGCCATCAGCCTGAGCGCCCGCCCCGACCCGACGGGCCTGCTGCGCCAGGATGCCGCGCGCCTGGCG 
CGGTTGCTGGAAATAGCCCAGGGCGAAGCACGGGTACGCGGTACGCCGATCCTCTGGCAGCCCAGCGCCAAG 
GGCTATCGCTTCAGCCCGCAGGCCTATCGCGGCAAGACCGACGCCTTCGCCGCCGACACCGAATTGCGCGCG 
CGCGACTGGCAGGCCGCGCCGCTGCGGGTCAGCGTGCGCCCGCCGCGACCGGTGTTGCTGGACGCCGAATGG 
ATCGGCGCGCCGTTGCGGATAACGCTCTCCGACGGCCAACACAGCGTCACCGTGCTGCGCGAGGCGAACGGC 
CATGTCCGGGTACACTGA