ViewGene

Locus Name:
GeneID:
Location:

GeneID:4600
TrivialName: PA14_60350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60350
PAO1 Ortholog Locus:PA4558
Sequence Length:441
Protein Length:146
Start: 5378920
Stop: 5378480
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07946.1|AE004869_10 (AE004869) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1]
Identities = 146/146 (100%), Positives = 146/146 (100%)
Sequence:
ATGGCTGAGTCGACCCGCATTGGCCAGGAGAGCCGCGTCACCCTGCATTTCGCCCTCAAGCTGGAGGACGGC
AACGTCGTCGACAGCACCTTCGACAAGCAGCCGGCCTCGTTCAAGGTCGGCGACGGCAACCTGCTGCCGGGC
TTCGAACAGGCGCTGTTCGGCTTGAAGGCTGGCGACAAGCGCACCCTGAGCATTCTTCCCGAACAGGGCTTC
GGCCAGCCGAATCCGCAGAACGTGCAGATCATGCCGCGCGACCAGTTCCAGGACATGGAGCTGGCCGAGGGC
CTGCTGGTGATCTTCAACGACGCGGCCAAGACCGAACTGCCGGGCGTGGTCAAGGCGTTCGATGAGCAGCAG
GTGACCGTCGACTTCAATCATCCGCTGGCCGGCAAGACCCTGGCCTTCGAAGTCGAGATCATCGACGTCCAG
CCGGCCTGA
Translation:
MAESTRIGQESRVTLHFALKLEDGNVVDSTFDKQPASFKVGDGNLLPGFEQALFGLKAGDKRTLSILPEQGF
GQPNPQNVQIMPRDQFQDMELAEGLLVIFNDAAKTELPGVVKAFDEQQVTVDFNHPLAGKTLAFEVEIIDVQ
PA*
AnnotationID:4606GeneID:4600
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 17:05:50
Gene Name:
Confidence Code:3
GeneProduct:probable peptidyl-prolyl cis-trans isomerase, FkbP-type
Cell Localization:()
Synonyms:PA4558
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1047
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66231.1|AE016251_7 (AE016776) peptidyl-prolyl cis-trans isomerase, FKBP-type
           [Pseudomonas putida KT2440]
          Length = 145

 Score =  230 bits (587), Expect = 2e-60
 Identities = 108/140 (77%), Positives = 124/140 (88%)

>gb|AAN78532.1|AE016755_32 (AE016755) FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase
           [Escherichia coli CFT073]
          Length = 149

 Score =  125 bits (315), Expect = 5e-29
 Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%)

Structural Features:
COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 174 residues,  81.0% aligned
Score =  157 bits (398), Expect = 9e-40
Identities = 69/142 (48%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Genomic Context:
Comment:
other possible gene name: slpA
ReferenceID:9201
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26342
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31655
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4600_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4600

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6968 PA4558_tr translation of PA4558 146 99.99 99.99 0 744.0
185160 gb|AAG07946.1|AE004869_10 (AE004869) probable peptidyl-prolyl cis-trans isomerase, FkbP-type [Pseudomonas aeruginosa PAO1] 146 99.99 99.99 0 744.0
185161 gb|AAA25885.1| (M35366) ORF149 [Pseudomonas fluorescens] 151 76.15 85.43 6 598.0
185162 gb|AAN66231.1|AE016251_7 (AE016776) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas putida KT2440] 146 73.97 84.93 1 583.0
185163 gb|AAO54350.1| (AE016858) peptidyl-prolyl cis-trans isomerase, FKBP-type [Pseudomonas syringae pv. tomato str. DC3000] 158 68.35 81.01 12 582.0
GC ORFID: 47602How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4558Glimmer Score:
Start: 4642599Stop: 4642159
Length: 441
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4558 translation of PA4558Homolog Bit Score 291.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3536 (ORF: BLASTX 231.0), t_PA4558 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGAGTCGACCCGCATTGGCCAGGAGAGCCGCGTCACCCTGCATTTCGCCCTCAAGCTGGAGGACGGC
AACGTCGTCGACAGCACCTTCGACAAGCAGCCGGCCTCGTTCAAGGTCGGCGACGGCAACCTGCTGCCGGGC
TTCGAACAGGCGCTGTTCGGCTTGAAGGCTGGCGACAAGCGCACCCTGAGCATTCTTCCCGAACAGGGCTTC
GGCCAGCCGAATCCGCAGAACGTGCAGATCATGCCGCGCGACCAGTTCCAGGACATGGAGCTGGCCGAGGGC
CTGCTGGTGATCTTCAACGACGCGGCCAAGACCGAACTGCCGGGCGTGGTCAAGGCGTTCGATGAGCAGCAG
GTGACCGTCGACTTCAATCATCCGCTGGCCGGCAAGACCCTGGCCTTCGAAGTCGAGATCATCGACGTCCAG
CCGGCCTGA