ViewGene
Locus Name:
GeneID:
Location:

GeneID:460
TrivialName: PA14_47600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47600
PAO1 Ortholog Locus:PA1284
Sequence Length:1821
Protein Length:606
Start: 4237997
Stop: 4239817
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04673.1|AE004558_2 (AE004558) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 605/606 (99%), Positives = 605/606 (99%)
Sequence:
ATGCCCGTTTACAAAGCCCCGCTGCGCGACACGCGCTTCCTGCTCAACGAAGTCTTCGATTTCCCCGAGCAT
TACCGCAACCTGGTCAACGGCGCCGAAGCCACGCCGGACATGGTCGATGCGATCCTCGGCGAATGCGCGAAG
CTCTGCGAGGAAGTGATCGCCCCGCTCTACCACAGCGGCGACGAGGAAGGCTGCCACCTGGAGAACGGCGAA
GTACGGACGCCGAAGGGCTACAAGGAAGCCTACGAGGCCTACGTCGCCGGCGGCTGGCAGGGCCTCTCGCAC
CCGGTGGAGTACGGTGGCCAGGGCCTGCCGATGAGCCTCGGCGCGCTCAAGCAGGAGATGATGGGCACCGCC
AACTGGCCGTTCTCCATGTATCCCGGCCTCTCCCTCGGCGCGATGAACACCCTGATGCAGCACGGCACCGAG
GAACAGAAGCAGACCTACCTGGTTCCGCTCACCGAGGGCCGCTGGGGCGGCACCATGTGCCTCACCGAGCCG
CAGTGCGGCACCGATCTCGGCCAGGTGAAGACCCGCGCCGAGGCCAACCCCGACGGTAGCTACGCCATCAGC
GGGACGAAGATATTCATCTCTTCCGGCGAACACGACCTCACCGAGAACATCGTCCACATCGTCCTCGCCCGC
CTGCCGGACGCACCGAAGGGCACCCGCGGCATTTCCCTGTTCATCGTGCCCAAGTTCCTTCCCGGCGAAGGC
GGCGCGCTCGGCCCGCGCAACGGCGTGAGTTGCGGCGCGCTGGAGAAGAAGATGGGGATCAAGGCCTCGGCC
ACCTGCGTGATGAACTTCGACGGCGCCACCGGCTTCCTCATCGGGCCGCCGAACAAGGGCCTGGAATGCATG
TTCACCTTCATGAACAGCGCCCGCATCGGCACCGCCATCCAGGGCGTGGCCACCGCCGAGCTGGCCTACCAG
GGCGCCCTCGCCTACGCCCGCGAACGCCGCTCCATGCGCGCGCTCTCCGGGACCAAGGAACCCGACCAGGTC
GCCGACAGCCTGATGCACCACGGCGACGTGCGGCGCATGCTGCTGACCCAGAAGGCCATCGCCGAAGGCGGC
CGGGCGCTGGTCTACCTGGCCACCCAGTACGCCGACCGGATGATCCAGGGCATCCTCAGCAACGACGACGCC
GAGTACGAACGCTGGGACGACAAGCTCGGCTTCCTCACGCCGATCCTCAAGGGCTGCCTGACCGAACTCGGC
CTGGAAAGCGCCAACCTCGGCATGCAGGTGTTCGGCGGCCACGGCTATATCCGCGAACACGGCATGGAGCAG
ATCGTCCGCGACGCGCGGATCGCCACCCTCTACGAAGGCACCACCGGCATCCAGGCCCTCGACCTGCTCGGC
CGCAAGGTCCTGCTGATGACCCAGGGCAAGGCCGTGCGCGACTTCACCAGGGGCGTGGCCCGGTTCGCCGTC
GACCTGCTGAAGAACGAGCCGCGCATGCGCGGCCGCGCCCTGGTGCTGCTCAAGCTCTGCGCCCAATGGAAC
CTGCTGACCCTGCGCATTGCCCTCACCGCGCGCAAGCAACGCGATCTGGTGAGCACCGCCAGCCACGACTAT
CTGATGTTCTCCGGCTACGCCACGCTGGCCTATTCCTGGGCCCTCCAGGAAGCCGCTGCGCGCCGGCGACTG
CGCCAGGGCGGCAGCGAGTCGGCGGACTTCTACAAGGCCAAGATCGCCACCAGCGAGTTCTACTTCGCCCGC
CTGCTTCCGCGCGCCAAGGGCCACGCGGCGGCGATGGCGAAGCCGACCGGTTCGATCATGGACCTGAAGAGC
GAGCACTTCGCCTTCGACTGA
Translation:
MPVYKAPLRDTRFLLNEVFDFPEHYRNLVNGAEATPDMVDAILGECAKLCEEVIAPLYHSGDEEGCHLENGE
VRTPKGYKEAYEAYVAGGWQGLSHPVEYGGQGLPMSLGALKQEMMGTANWPFSMYPGLSLGAMNTLMQHGTE
EQKQTYLVPLTEGRWGGTMCLTEPQCGTDLGQVKTRAEANPDGSYAISGTKIFISSGEHDLTENIVHIVLAR
LPDAPKGTRGISLFIVPKFLPGEGGALGPRNGVSCGALEKKMGIKASATCVMNFDGATGFLIGPPNKGLECM
FTFMNSARIGTAIQGVATAELAYQGALAYARERRSMRALSGTKEPDQVADSLMHHGDVRRMLLTQKAIAEGG
RALVYLATQYADRMIQGILSNDDAEYERWDDKLGFLTPILKGCLTELGLESANLGMQVFGGHGYIREHGMEQ
IVRDARIATLYEGTTGIQALDLLGRKVLLMTQGKAVRDFTRGVARFAVDLLKNEPRMRGRALVLLKLCAQWN
LLTLRIALTARKQRDLVSTASHDYLMFSGYATLAYSWALQEAAARRRLRQGGSESADFYKAKIATSEFYFAR
LLPRAKGHAAAMAKPTGSIMDLKSEHFAFD*
AnnotationID:469GeneID:460
AnnotatorUID: diggins
Modification Date/Time: 2005-05-25 13:01:58
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA1284
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01153,COG1960,cd00567,cd01158
Secondary Functional Category(ies):putative enzyme
EC Number:1.3.99.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65999.1|AE016228_12 (AE016775) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 601

 Score =  692 bits (1786), Expect = 0.0
 Identities = 350/603 (58%), Positives = 434/603 (71%), Gaps = 6/603 (0%)

>gb|AAO54044.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 601

 Score =  680 bits (1754), Expect = 0.0
 Identities = 343/603 (56%), Positives = 433/603 (71%), Gaps = 6/603 (0%)

>gb|AAC37155.2| (L05770) acyl-CoA dehydrogenase [Acinetobacter sp. ADP1]
          Length = 600

 Score =  593 bits (1529), Expect = e-168
 Identities = 314/608 (51%), Positives = 417/608 (68%), Gaps = 11/608 (1%)








 
Structural Features:
cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues,  99.8% aligned
Score =  450 bits (1160), Expect = 2e-127

COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
CD-Length = 393 residues,  99.0% aligned
Score =  258 bits (661), Expect = 9e-70
Identities = 142/438 (32%), Positives = 197/438 (44%), Gaps = 56/438 (12%)

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  95.4% aligned
Score =  200 bits (511), Expect = 3e-52

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  97.1% aligned
Score =  184 bits (469), Expect = 2e-47






   
Genomic Context:






   
Comment:


















    ReferenceID:923




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18065




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37504




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:460_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:460
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
786
                           PA1284_tr
                           translation of PA1284
                           606
                           99.83
                           99.83
                           0
                           3155.0
     

     
     
34070
                           gb|AAG04673.1|AE004558_2
                           (AE004558) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           606
                           99.83
                           99.83
                           0
                           3155.0
     

     
     
787
                           PA0507_tr
                           translation of PA0507
                           606
                           60.56
                           71.61
                           8
                           1837.0
     

     
     
34071
                           gb|AAG03896.1|AE004487_10
                           (AE004487) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           606
                           60.56
                           71.61
                           8
                           1837.0
     

     
     
788
                           PA0506_tr
                           translation of PA0506
                           609
                           58.45
                           72.08
                           11
                           1817.0
     

     






      

          
GC ORFID: 43462How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1284Glimmer Score: 

          
Start: 715912Stop: 714092

          
Length: 1821


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1284 translation of PA1284Homolog Bit Score 1219.0

          
Other Homologs:  t_PA0507 (ORF: BLASTX 707.0), t_PA0506 (ORF: BLASTX 700.0), t_PA4199 (ORF: BLASTX 551.0), t_PA5187 (ORF: BLASTX 544.0), psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 524.0), t_PA0508 (ORF: BLASTX 521.0), t_PA1284 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGTTTACAAAGCCCCGCTGCGCGACACGCGCTTCCTGCTCAACGAAGTCTTCGATTTCCCCGAGCAT 
TACCGCAACCTGGTCAACGGCGCCGAAGCCACGCCGGACATGGTCGATGCGATCCTCGGCGAATGCGCGAAG 
CTCTGCGAGGAAGTGATCGCCCCGCTCTACCACAGCGGCGACGAGGAAGGCTGCCACCTGGAGAACGGCGAA 
GTACGGACGCCGAAGGGCTACAAGGAAGCCTACGAGGCCTACGTCGCCGGCGGCTGGCAGGGCCTCTCGCAC 
CCGGTGGAGTACGGTGGCCAGGGCCTGCCGATGAGCCTCGGCGCGCTCAAGCAGGAGATGATGGGCACCGCC 
AACTGGCCGTTCTCCATGTATCCCGGCCTCTCCCTCGGCGCGATGAACACCCTGATGCAGCACGGCACCGAG 
GAACAGAAGCAGACCTACCTGGTTCCGCTCACCGAGGGCCGCTGGGGCGGCACCATGTGCCTCACCGAGCCG 
CAGTGCGGCACCGATCTCGGCCAGGTGAAGACCCGCGCCGAGGCCAACCCCGACGGTAGCTACGCCATCAGC 
GGGACGAAGATATTCATCTCTTCCGGCGAACACGACCTCACCGAGAACATCGTCCACATCGTCCTCGCCCGC 
CTGCCGGACGCACCGAAGGGCACCCGCGGCATTTCCCTGTTCATCGTGCCCAAGTTCCTTCCCGGCGAAGGC 
GGCGCGCTCGGCCCGCGCAACGGCGTGAGTTGCGGCGCGCTGGAGAAGAAGATGGGGATCAAGGCCTCGGCC 
ACCTGCGTGATGAACTTCGACGGCGCCACCGGCTTCCTCATCGGGCCGCCGAACAAGGGCCTGGAATGCATG 
TTCACCTTCATGAACAGCGCCCGCATCGGCACCGCCATCCAGGGCGTGGCCACCGCCGAGCTGGCCTACCAG 
GGCGCCCTCGCCTACGCCCGCGAACGCCGCTCCATGCGCGCGCTCTCCGGGACCAAGGAACCCGACCAGGTC 
GCCGACAGCCTGATGCACCACGGCGACGTGCGGCGCATGCTGCTGACCCAGAAGGCCATCGCCGAAGGCGGC 
CGGGCGCTGGTCTACCTGGCCACCCAGTACGCCGACCGGATGATCCAGGGCATCCTCAGCAACGACGACGCC 
GAGTACGAACGCTGGGACGACAAGCTCGGCTTCCTCACGCCGATCCTCAAGGGCTGCCTGACCGAACTCGGC 
CTGGAAAGCGCCAACCTCGGCATGCAGGTGTTCGGCGGCCACGGCTATATCCGCGAACACGGCATGGAGCAG 
ATCGTCCGCGACGCGCGGATCGCCACCCTCTACGAAGGCACCACCGGCATCCAGGCCCTCGACCTGCTCGGC 
CGCAAGGTCCTGCTGATGACCCAGGGCAAGGCCGTGCGCGACTTCACCAGGGGCGTGGCCCGGTTCGCCGTC 
GACCTGCTGAAGAACGAGCCGCGCATGCGCGGCCGCGCCCTGGTGCTGCTCAAGCTCTGCGCCCAATGGAAC 
CTGCTGACCCTGCGCATTGCCCTCACCGCGCGCAAGCAACGCGATCTGGTGAGCACCGCCAGCCACGACTAT 
CTGATGTTCTCCGGCTACGCCACGCTGGCCTATTCCTGGGCCCTCCAGGAAGCCGCTGCGCGCCGGCGACTG 
CGCCAGGGCGGCAGCGAGTCGGCGGACTTCTACAAGGCCAAGATCGCCACCAGCGAGTTCTACTTCGCCCGC 
CTGCTTCCGCGCGCCAAGGGCCACGCGGCGGCGATGGCGAAGCCGACCGGTTCGATCATGGACCTGAAGAGC 
GAGCACTTCGCCTTCGACTGA