ViewGene

Locus Name:
GeneID:
Location:

GeneID:46
TrivialName: PA14_49160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49160
PAO1 Ortholog Locus:PA1181
Sequence Length:3363
Protein Length:1120
Start: 4369203
Stop: 4365841
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04570.1|AE004548_4 (AE004548) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 1118/1120 (99%), Positives = 1119/1120 (99%)
Sequence:
ATGTTCAGTGGCAAAACCGACGACAGGGGCTTGTGGGCGGGCATCCAGGCCGGTGTGCTGTTCTTTCTCGCC
GCCCTGGCCTGCATCTACCTGTCGCGCCAGCCTGCCACCATCGCGGCGATCTGGCTGCCCAACGCGATCCTC
ACCGCCGCCCTGCTGCGCGCGCCGCTGCGCCAGTGGCCGGCGATCCTGCTCTGCTCCGCCGTGGCCAACCTG
GCGGCCAACCGCCTGTATGGCGACAGCCTGTGGATGAGCGCGGCGTTCCTGCCGGCCAACCTGAGCGAAGCG
ATCTTCGCCGCGATGCTGTTACGCATCAACCGGGTGCGCGAGGACTTCGAGTTCAACCTGCATTCGGCGGTT
CGCGTGCTCTGGGCCGGCGCGCTGATCCCGCCCTTGCTCGGTGCCTCGGTGGGCGCGGTGCTGGTCAGCGTC
TTCGGCATGGGGCGTTTCCCGGAAATGTGGGCGCGCTGGTACGTGGGCGATGCGATGGGCATGCTCGCGCTG
CTGCCGTTGTGCATGGCCAGCAACCTGGCGGCCTGGCGTCACGCTCTGTCGGGGCGGGCGGGAGTGGACAAC
GCGATGCTCCTGCTGGTGACCCTGGTGATCAGCTTCGTGGCCCTGACGCGCCTGCCCTACGCCTTCATCTAC
GTGCTCCTGCCGCTGCTGGTGGCCGCCGCCAGCACCAGCGTGTTCGGCACCGCGCTGATCGGCTGCCTGAAC
ACCTGTTTCATCGCCGTGCTGATCGCCCTCGGCGTGTTCGTCCCCGAGTCGTCCCAGCAGCGTTTCGGCGAG
CCGCTGCTGTACCTGCCGATGGCCTTGACCCTCATTCCCGCCTTCCTGGTCTCGGTGATCATGGAGCGCAGC
CGCCGCGAGCAGCATCAGGTGGCCATCGGCGAGGCGCAGTTCCGCGGCGCCATGGAATTCTCGGCGATCGGC
ATGGCCCTGGTGTCGCTGGAGGGGCGGCTGTTCAAGGTCAACGAGGCGCTGTGCCGGATGCTCGGCTATTCC
GCCGAACGCTTGGGCGAGCTGTCGTTCCAGGAGATCACCTATGTGGACGACCTGGAACTGGACCTCGACCTG
GTGCGCGACCTGCTCGCCGGGCGTATCAACTCCTACCAGATGGAGAAGCGCTACCTGCGCCAGGACGGCGAA
ACCTTCTGGGCGCGCATCAGCGTGTCGCTGGTGCGCGATGAGGAGGGAGTCGCCCAGTACTTCGTCACCCAG
GTGGAGGATATCGACAGTCGCAAGCGTGCCGAGCTGGAGCGCGAGCGCCTCGCCGAACGGATCAAGCTGGCC
ACCGACGCCGGGCAGATCGGCATCTGGGAGTGGGACCTGGCGCGCAACCGCCTGCACTGGGATTTCCGCATG
TTCGACCTGTACGGCATCCGCAGCGGTCCCGGGGAGACCACGGTGGAGCAGTGGAAGGCGAGCCTGCATGCC
GAGGATCACGACCGCGTGCTGCGCGAGCTGGAGCGCGCCGTCAGCGGGTTGCAGAAATTCGACTGCGAGTTC
CGTATCGTCCGCCCCAACCGCGAGGTTCGCCACCTGCGGGCGATCGCCACGCTGACGCGCGACGAGGACAAC
CGTCCGGTGCGGATGATCGGCATCAACAGCGACATCACCGAGATCCGCACCCTGGCGGAAACCCTGCACGAG
GAAAAGGAACGCTTGCAGGTGACCCTGTATTCCATCGGCGATGCCGTGTTGACCACCGACGCCGGCGGCCGC
GTGACCTTCATGAACCCGGTGGCCGAGGCGATGACCGGCTGGACCTTGCAGGACGCCATCGGCGCGCCCCAC
GAACTGGTCTTCAACGTGCTCGACAGCGACACCGGCGAGGCCCTGGAAAGCCCGGTGCGACGCTGCCTGCAG
AACACCCGGGTGTTCTACCTGGAGGACGGCGCCACGCTGATCAGCCGCAAGGGCGAGCAGCACGATATCCAG
AATTGCGCGGCGCCGGTGCGCACCCGCGATGGCGAGATCATCGGCACCGTGCTGGTGTTCCAGAACGTCACC
AAGGCCCGGGCGATGCAGCGCGAGCTGAGCTATCACGCCTCCCACGATGCCCTCACCGGGCTGTTCAACCGC
ACCAAGTTCGAGGAGGAGCTGCAACGCGCCCTGGCCAACGCCCAGGAGCGGGCGACCCAGCATGCGCTGTGC
TTCATCGACCTCGACCGCTTCAAGGTGGTCAACGATTCCGCCGGGCACGCGGCGGGCGACATGCTGCTGCGC
GAGCTGAGCCGGATTCTCGCCGACCGTACCCGCGCCTCCGACACCCTGGCGCGGCTGGGCGGCGATGAGTTC
GGCCTGCTGCTGTTCGATTGCGACCTGGCGGAGGCGGAGCAGGTGGCGAGCAAGCTCATCGAGCAGATCTGC
TCGGTGCGCTTCCCCTGGGAAGGGCGGCTCTACGACGTGGGCGCGAGCATCGGTATCACCGCCCTTACCGCC
ACCTCGCGCAGCACCAGCGAACTGATGAGCCAGGCCGACGTGGCCTGCTACGCGGCCAAGCATGCCGGGCGC
AACCGGGTTTCGGTGTACCAGTTCGGCCATGAGGAAGTGGAGCGCCAGCACCGCGACATACTCCTCGCCAGC
GGGCTGCGCGAGGCCCTGGAGAACGACCGCTTCCAGTTGCAGGCGCAGGAGATCGTCCCGGTCGGCCCCCGC
CGCGACGGCGACCGGCACTACGAGCTGCTGCTGCGACTGTACGATCCGGATGGCCAGATGACTCCGCCGGGC
GCCTTCATCCCGGCCGCCGAGCGCTTCAACCTGATGGCCAGCATCGACCGCTGGGTGATCAACGAGGCGCTG
ATCAACTTCGGCGCGCGGATCGCCGCGGTGGAGGGCCTGAGCATCGGCATCAACCTGTCCGGCAACTCGCTC
AACGACCCGCTGTTCCTGCCTTACCTGCTGGATCGCATCGAACACTCGCCGCTGAGGCCGGAGCGCCTGTAC
TTCGAGCTGACCGAGACGGCGTTGATGAACCAGTTGTCGGTGGCTTCGCGGATCGTCGCCAAGCTGCGCGAC
CTCGGCTGCAAGGTGGCGTTGGACGACTTCGGCTCCGGCCTGAGTTCCTTCAATTACCTGAAGAATTTCGTC
GTCGACGTGATCAAGATCGACGGCAGCTTCGTCCGCAACCTGGACAAGAGCCCGGTGGACCAGGCCATCGTC
GACTCCATCAACCAGATCGCCCACCGCCTGGGCGCGGTGACCGTGGCCGAGTTCGTCGAGAGCCGGGAAATC
CTCGATCACCTGGCGCGCCTCGGGGTGGATTTCGCCCAGGGCTACGCGGTCGGTCGGCCGCAGCCGTTCGCC
ACGGTGCTCGACCAACTGCGCAGCGGGCTTCGTCGCCAGGAGTTGGGCTGA
Translation:
MFSGKTDDRGLWAGIQAGVLFFLAALACIYLSRQPATIAAIWLPNAILTAALLRAPLRQWPAILLCSAVANL
AANRLYGDSLWMSAAFLPANLSEAIFAAMLLRINRVREDFEFNLHSAVRVLWAGALIPPLLGASVGAVLVSV
FGMGRFPEMWARWYVGDAMGMLALLPLCMASNLAAWRHALSGRAGVDNAMLLLVTLVISFVALTRLPYAFIY
VLLPLLVAAASTSVFGTALIGCLNTCFIAVLIALGVFVPESSQQRFGEPLLYLPMALTLIPAFLVSVIMERS
RREQHQVAIGEAQFRGAMEFSAIGMALVSLEGRLFKVNEALCRMLGYSAERLGELSFQEITYVDDLELDLDL
VRDLLAGRINSYQMEKRYLRQDGETFWARISVSLVRDEEGVAQYFVTQVEDIDSRKRAELERERLAERIKLA
TDAGQIGIWEWDLARNRLHWDFRMFDLYGIRSGPGETTVEQWKASLHAEDHDRVLRELERAVSGLQKFDCEF
RIVRPNREVRHLRAIATLTRDEDNRPVRMIGINSDITEIRTLAETLHEEKERLQVTLYSIGDAVLTTDAGGR
VTFMNPVAEAMTGWTLQDAIGAPHELVFNVLDSDTGEALESPVRRCLQNTRVFYLEDGATLISRKGEQHDIQ
NCAAPVRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFEEELQRALANAQERATQHALC
FIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLAEAEQVASKLIEQIC
SVRFPWEGRLYDVGASIGITALTATSRSTSELMSQADVACYAAKHAGRNRVSVYQFGHEEVERQHRDILLAS
GLREALENDRFQLQAQEIVPVGPRRDGDRHYELLLRLYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEAL
INFGARIAAVEGLSIGINLSGNSLNDPLFLPYLLDRIEHSPLRPERLYFELTETALMNQLSVASRIVAKLRD
LGCKVALDDFGSGLSSFNYLKNFVVDVIKIDGSFVRNLDKSPVDQAIVDSINQIAHRLGAVTVAEFVESREI
LDHLARLGVDFAQGYAVGRPQPFATVLDQLRSGLRRQELG*
AnnotationID:56GeneID:46
AnnotatorUID: diggins
Modification Date/Time: 2006-02-05 15:03:39
Gene Name:PA1181
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:yegE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3447
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAC75128.1| (AE000296) putative sensor-type protein [Escherichia coli K12]
          Length = 1105

 Score =  660 bits (1703), Expect = 0.0
 Identities = 397/1090 (36%), Positives = 609/1090 (55%), Gaps = 19/1090 (1%)

>gb|AAN81050.1|AE016763_9 (AE016763) Hypothetical protein yegE [Escherichia coli CFT073]
          Length = 1105

 Score =  651 bits (1680), Expect = 0.0
 Identities = 390/1096 (35%), Positives = 608/1096 (55%), Gaps = 17/1096 (1%)

>gb|AAN67381.1|AE016364_6 (AE016780) sensory box protein/GGDEF family protein [Pseudomonas
            putida KT2440]
          Length = 973

 Score =  425 bits (1093), Expect = e-118
 Identities = 238/569 (41%), Positives = 338/569 (59%), Gaps = 9/569 (1%)
Structural Features:
COG3447, Predicted integral membrane sensor domain 
[Signal transduction mechanisms].
CD-Length = 308 residues,  98.4% aligned
Score =  309 bits (793), Expect = 1e-84
Identities = 108/303 (35%), Positives = 158/303 (52%), Gaps = 3/303 (0%)

Genomic Context:
Comment:
ReferenceID:95
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16965
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI Conserved Domain Search
Reference Type:Blast (text/plain)
Data:PA1181_CDS.cgi
URL:
ReferenceID:17237
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:46

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
87 PA1181_tr translation of PA1181 1120 99.82 99.91 0 5674.0
11667 gb|AAG04570.1|AE004548_4 (AE004548) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 1120 99.82 99.91 0 5674.0
11668 gb|AAN67381.1|AE016364_6 (AE016780) sensory box protein/GGDEF family protein [Pseudomonas putida KT2440] 1232 27.11 40.17 371 1122.0
11669 gb|AAO55257.1| (AE016862) sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] 1204 23.83 35.63 470 1085.0
11671 gb|AAN53706.1|AE015509_11 (AE015509) GGDEF domain protein [Shewanella oneidensis MR-1] 1175 21.87 34.04 502 843.0
GC ORFID: 43048How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1181Glimmer Score:
Start: 584705Stop: 588067
Length: 3363
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1181 translation of PA1181Homolog Bit Score 2190.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7724 (ORF: BLASTX 416.0), t_PA1181 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCAGTGGCAAAACCGACGACAGGGGCTTGTGGGCGGGCATCCAGGCCGGTGTGCTGTTCTTTCTCGCC
GCCCTGGCCTGCATCTACCTGTCGCGCCAGCCTGCCACCATCGCGGCGATCTGGCTGCCCAACGCGATCCTC
ACCGCCGCCCTGCTGCGCGCGCCGCTGCGCCAGTGGCCGGCGATCCTGCTCTGCTCCGCCGTGGCCAACCTG
GCGGCCAACCGCCTGTATGGCGACAGCCTGTGGATGAGCGCGGCGTTCCTGCCGGCCAACCTGAGCGAAGCG
ATCTTCGCCGCGATGCTGTTACGCATCAACCGGGTGCGCGAGGACTTCGAGTTCAACCTGCATTCGGCGGTT
CGCGTGCTCTGGGCCGGCGCGCTGATCCCGCCCTTGCTCGGTGCCTCGGTGGGCGCGGTGCTGGTCAGCGTC
TTCGGCATGGGGCGTTTCCCGGAAATGTGGGCGCGCTGGTACGTGGGCGATGCGATGGGCATGCTCGCGCTG
CTGCCGTTGTGCATGGCCAGCAACCTGGCGGCCTGGCGTCACGCTCTGTCGGGGCGGGCGGGAGTGGACAAC
GCGATGCTCCTGCTGGTGACCCTGGTGATCAGCTTCGTGGCCCTGACGCGCCTGCCCTACGCCTTCATCTAC
GTGCTCCTGCCGCTGCTGGTGGCCGCCGCCAGCACCAGCGTGTTCGGCACCGCGCTGATCGGCTGCCTGAAC
ACCTGTTTCATCGCCGTGCTGATCGCCCTCGGCGTGTTCGTCCCCGAGTCGTCCCAGCAGCGTTTCGGCGAG
CCGCTGCTGTACCTGCCGATGGCCTTGACCCTCATTCCCGCCTTCCTGGTCTCGGTGATCATGGAGCGCAGC
CGCCGCGAGCAGCATCAGGTGGCCATCGGCGAGGCGCAGTTCCGCGGCGCCATGGAATTCTCGGCGATCGGC
ATGGCCCTGGTGTCGCTGGAGGGGCGGCTGTTCAAGGTCAACGAGGCGCTGTGCCGGATGCTCGGCTATTCC
GCCGAACGCTTGGGCGAGCTGTCGTTCCAGGAGATCACCTATGTGGACGACCTGGAACTGGACCTCGACCTG
GTGCGCGACCTGCTCGCCGGGCGTATCAACTCCTACCAGATGGAGAAGCGCTACCTGCGCCAGGACGGCGAA
ACCTTCTGGGCGCGCATCAGCGTGTCGCTGGTGCGCGATGAGGAGGGAGTCGCCCAGTACTTCGTCACCCAG
GTGGAGGATATCGACAGTCGCAAGCGTGCCGAGCTGGAGCGCGAGCGCCTCGCCGAACGGATCAAGCTGGCC
ACCGACGCCGGGCAGATCGGCATCTGGGAGTGGGACCTGGCGCGCAACCGCCTGCACTGGGATTTCCGCATG
TTCGACCTGTACGGCATCCGCAGCGGTCCCGGGGAGACCACGGTGGAGCAGTGGAAGGCGAGCCTGCATGCC
GAGGATCACGACCGCGTGCTGCGCGAGCTGGAGCGCGCCGTCAGCGGGTTGCAGAAATTCGACTGCGAGTTC
CGTATCGTCCGCCCCAACCGCGAGGTTCGCCACCTGCGGGCGATCGCCACGCTGACGCGCGACGAGGACAAC
CGTCCGGTGCGGATGATCGGCATCAACAGCGACATCACCGAGATCCGCACCCTGGCGGAAACCCTGCACGAG
GAAAAGGAACGCTTGCAGGTGACCCTGTATTCCATCGGCGATGCCGTGTTGACCACCGACGCCGGCGGCCGC
GTGACCTTCATGAACCCGGTGGCCGAGGCGATGACCGGCTGGACCTTGCAGGACGCCATCGGCGCGCCCCAC
GAACTGGTCTTCAACGTGCTCGACAGCGACACCGGCGAGGCCCTGGAAAGCCCGGTGCGACGCTGCCTGCAG
AACACCCGGGTGTTCTACCTGGAGGACGGCGCCACGCTGATCAGCCGCAAGGGCGAGCAGCACGATATCCAG
AATTGCGCGGCGCCGGTGCGCACCCGCGATGGCGAGATCATCGGCACCGTGCTGGTGTTCCAGAACGTCACC
AAGGCCCGGGCGATGCAGCGCGAGCTGAGCTATCACGCCTCCCACGATGCCCTCACCGGGCTGTTCAACCGC
ACCAAGTTCGAGGAGGAGCTGCAACGCGCCCTGGCCAACGCCCAGGAGCGGGCGACCCAGCATGCGCTGTGC
TTCATCGACCTCGACCGCTTCAAGGTGGTCAACGATTCCGCCGGGCACGCGGCGGGCGACATGCTGCTGCGC
GAGCTGAGCCGGATTCTCGCCGACCGTACCCGCGCCTCCGACACCCTGGCGCGGCTGGGCGGCGATGAGTTC
GGCCTGCTGCTGTTCGATTGCGACCTGGCGGAGGCGGAGCAGGTGGCGAGCAAGCTCATCGAGCAGATCTGC
TCGGTGCGCTTCCCCTGGGAAGGGCGGCTCTACGACGTGGGCGCGAGCATCGGTATCACCGCCCTTACCGCC
ACCTCGCGCAGCACCAGCGAACTGATGAGCCAGGCCGACGTGGCCTGCTACGCGGCCAAGCATGCCGGGCGC
AACCGGGTTTCGGTGTACCAGTTCGGCCATGAGGAAGTGGAGCGCCAGCACCGCGACATACTCCTCGCCAGC
GGGCTGCGCGAGGCCCTGGAGAACGACCGCTTCCAGTTGCAGGCGCAGGAGATCGTCCCGGTCGGCCCCCGC
CGCGACGGCGACCGGCACTACGAGCTGCTGCTGCGACTGTACGATCCGGATGGCCAGATGACTCCGCCGGGC
GCCTTCATCCCGGCCGCCGAGCGCTTCAACCTGATGGCCAGCATCGACCGCTGGGTGATCAACGAGGCGCTG
ATCAACTTCGGCGCGCGGATCGCCGCGGTGGAGGGCCTGAGCATCGGCATCAACCTGTCCGGCAACTCGCTC
AACGACCCGCTGTTCCTGCCTTACCTGCTGGATCGCATCGAACACTCGCCGCTGAGGCCGGAGCGCCTGTAC
TTCGAGCTGACCGAGACGGCGTTGATGAACCAGTTGTCGGTGGCTTCGCGGATCGTCGCCAAGCTGCGCGAC
CTCGGCTGCAAGGTGGCGTTGGACGACTTCGGCTCCGGCCTGAGTTCCTTCAATTACCTGAAGAATTTCGTC
GTCGACGTGATCAAGATCGACGGCAGCTTCGTCCGCAACCTGGACAAGAGCCCGGTGGACCAGGCCATCGTC
GACTCCATCAACCAGATCGCCCACCGCCTGGGCGCGGTGACCGTGGCCGAGTTCGTCGAGAGCCGGGAAATC
CTCGATCACCTGGCGCGCCTCGGGGTGGATTTCGCCCAGGGCTACGCGGTCGGTCGGCCGCAGCCGTTCGCC
ACGGTGCTCGACCAACTGCGCAGCGGGCTTCGTCGCCAGGAGTTGGGCTGA