ViewGene
Locus Name:
GeneID:
Location:

GeneID:4599
TrivialName: PA14_18620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18620
PAO1 Ortholog Locus:PA3536
Sequence Length:468
Protein Length:155
Start: 1599380
Stop: 1599847
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06924.1|AE004774_2 (AE004774) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 152/155 (98%), Positives = 153/155 (98%)
Sequence:
ATGGAGGAGGCGGGTTTCGGACCAGGGAGGTCGAGCATGCACACGGGAGAAACACTCGCCGCCGCGCCGCCG
GCACGGCCATTGCGCCAATCGCGGCTGGGCGGCCTGTCGCTGTTCCTCGCCCTGGCCGGGGTCGCCATCGCG
CTGGTGGTGATGGCGCTGGCGCTCGGCGAGCGGATCGACCTCAGCGACGAGAACCATCTGCTCGGCCTGTTC
GCCGCCTTGCTGGCGGTCTTCGCGGTATCGACCTGCGGCCTGGTGCTGGGCCTGGCCGGCCTGCTCAGGCGC
AGCCGCAAGCGTCACCTGGCCCTGGCCGGCATCGTCCTCAACCTGTCGTGCCTGCTCTGGGGCTGGCATGCG
CTGAGCACGGCGGCGGCCGCGATCCTGATGGTCCTGGGGCAAACCGGGTTGTCGTTCCTCAGCGCCCTGGCG
GTGCTGTTCGGCATGATCATCTTCCGCCAGGCCTGA
Translation:
MEEAGFGPGRSSMHTGETLAAAPPARPLRQSRLGGLSLFLALAGVAIALVVMALALGERIDLSDENHLLGLF
AALLAVFAVSTCGLVLGLAGLLRRSRKRHLALAGIVLNLSCLLWGWHALSTAAAAILMVLGQTGLSFLSALA
VLFGMIIFRQA*
AnnotationID:4605GeneID:4599
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 17:05:13
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3536
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9199




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26340




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4599
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6967
                           PA3536_tr
                           translation of PA3536
                           155
                           98.06
                           98.70
                           0
                           746.0
     

     
     
185159
                           gb|AAG06924.1|AE004774_2
                           (AE004774) hypothetical protein PA3536 [Pseudomonas aeruginosa PAO1]
                           155
                           98.06
                           98.70
                           0
                           746.0
     

     






      

          
GC ORFID: 47601How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3536Glimmer Score: 

          
Start: 3354554Stop: 3354087

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3536 translation of PA3536Homolog Bit Score 291.0

          
Other Homologs:  t_PA3536 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGGAGGCGGGTTTCGGACCAGGGAGGTCGAGCATGCACACGGGAGAAACACTCGCCGCCGCGCCGCCG 
GCACGGCCATTGCGCCAATCGCGGCTGGGCGGCCTGTCGCTGTTCCTCGCCCTGGCCGGGGTCGCCATCGCG 
CTGGTGGTGATGGCGCTGGCGCTCGGCGAGCGGATCGACCTCAGCGACGAGAACCATCTGCTCGGCCTGTTC 
GCCGCCTTGCTGGCGGTCTTCGCGGTATCGACCTGCGGCCTGGTGCTGGGCCTGGCCGGCCTGCTCAGGCGC 
AGCCGCAAGCGTCACCTGGCCCTGGCCGGCATCGTCCTCAACCTGTCGTGCCTGCTCTGGGGCTGGCATGCG 
CTGAGCACGGCGGCGGCCGCGATCCTGATGGTCCTGGGGCAAACCGGGTTGTCGTTCCTCAGCGCCCTGGCG 
GTGCTGTTCGGCATGATCATCTTCCGCCAGGCCTGA