ViewGene
Locus Name:
GeneID:
Location:

GeneID:4598
TrivialName: PA14_25040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25040
PAO1 Ortholog Locus:PA3017
Sequence Length:438
Protein Length:145
Start: 2190845
Stop: 2190408
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06405.1|AE004727_1 (AE004727) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/145 (100%), Positives = 145/145 (100%)
Sequence:
ATGCCCTATCAACACATTCTGGTCGCCGTCGACCTGACCGACGAATGCGACCCGGTGATGAAGCGTGCGGCG
GCCCTGGCCACCAGCAACCAGGCCCGGCTCTCGGTGGTGCATGTGGTCGAGCCCATGGCCATGGCCTTCGGT
GGGGACGTGCCGATGGACCTGTCGATGTTGCAGCAGCAGCAGTTCGACCAGGCCCGTGAACGCCTGGATGCC
TTCGCCGTACGCTATCCGGACCTCGGCAGCGAGCAGCGCCACCTGGTCTACGGGCAACCGCGCCAGGAAATC
CACCGCCTCGCCGCGGAACAGGCCTGCGACCTGATCGTGGTCGGCAGCCACGGTCGCCACGGCCTGGCGCTG
CTGCTCGGTTCCACTGCCAACGACGTGCTGCACGGCGCGCCCTGCGACGTGCTCGCGGTGCACCTGAAGAAA
GCCTGA
Translation:
MPYQHILVAVDLTDECDPVMKRAAALATSNQARLSVVHVVEPMAMAFGGDVPMDLSMLQQQQFDQARERLDA
FAVRYPDLGSEQRHLVYGQPRQEIHRLAAEQACDLIVVGSHGRHGLALLLGSTANDVLHGAPCDVLAVHLKK
A*
AnnotationID:4604GeneID:4598
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:45
Gene Name:
Confidence Code:3
GeneProduct:putative universal stress protein
Cell Localization:()
Synonyms:PA3017
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0589,pfam00582
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56995.1| (AE016868) universal stress protein family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 153

 Score =  228 bits (581), Expect = 8e-60
 Identities = 112/147 (76%), Positives = 128/147 (87%), Gaps = 2/147 (1%)

>gb|AAN67745.1|AE016405_8 (AE016782) universal stress protein family [Pseudomonas putida
           KT2440]
          Length = 146

 Score =  225 bits (573), Expect = 6e-59
 Identities = 108/144 (75%), Positives = 124/144 (86%)

>emb|CAD84939.1| (BX321859) Universal stress protein (Usp) [Nitrosomonas europaea
           ATCC 19718]
          Length = 148

 Score =  120 bits (301), Expect = 2e-27
 Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 8/146 (5%)








 
Structural Features:
COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins 
[Signal transduction mechanisms]
CD-Length = 154 residues,  98.1% aligned
Score = 78.9 bits (193), Expect = 2e-16

pfam00582, Usp, Universal stress protein family
CD-Length = 139 residues, 100.0% aligned
Score = 94.9 bits (235), Expect = 4e-21
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 1/140 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:9197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26338




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36033




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4598_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4598
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6966
                           PA3017_tr
                           translation of PA3017
                           145
                           99.99
                           99.99
                           0
                           745.0
     

     
     
185154
                           gb|AAG06405.1|AE004727_1
                           (AE004727) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           145
                           99.99
                           99.99
                           0
                           745.0
     

     
     
185156
                           gb|AAN67745.1|AE016405_8
                           (AE016782) universal stress protein family [Pseudomonas putida KT2440]
                           146
                           73.97
                           84.93
                           1
                           572.0
     

     
     
185155
                           gb|AAO56995.1|
                           (AE016868) universal stress protein family [Pseudomonas syringae pv. tomato str. DC3000]
                           153
                           73.20
                           83.66
                           8
                           583.0
     

     
     
185157
                           emb|CAD84939.1|
                           (BX321859) Universal stress protein (Usp) [Nitrosomonas europaea ATCC 19718]
                           151
                           45.03
                           61.58
                           9
                           303.0
     

     






      

          
GC ORFID: 47600How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3017Glimmer Score: 

          
Start: 2763082Stop: 2763519

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3017 translation of PA3017Homolog Bit Score 291.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8145 (ORF: BLASTX 237.0), t_PA3017 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCTATCAACACATTCTGGTCGCCGTCGACCTGACCGACGAATGCGACCCGGTGATGAAGCGTGCGGCG 
GCCCTGGCCACCAGCAACCAGGCCCGGCTCTCGGTGGTGCATGTGGTCGAGCCCATGGCCATGGCCTTCGGT 
GGGGACGTGCCGATGGACCTGTCGATGTTGCAGCAGCAGCAGTTCGACCAGGCCCGTGAACGCCTGGATGCC 
TTCGCCGTACGCTATCCGGACCTCGGCAGCGAGCAGCGCCACCTGGTCTACGGGCAACCGCGCCAGGAAATC 
CACCGCCTCGCCGCGGAACAGGCCTGCGACCTGATCGTGGTCGGCAGCCACGGTCGCCACGGCCTGGCGCTG 
CTGCTCGGTTCCACTGCCAACGACGTGCTGCACGGCGCGCCCTGCGACGTGCTCGCGGTGCACCTGAAGAAA 
GCCTGA