ViewGene

Locus Name:
GeneID:
Location:

GeneID:4597
TrivialName: PA14_52280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52280
PAO1 Ortholog Locus:PA0926
Sequence Length:426
Protein Length:141
Start: 4639610
Stop: 4640035
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04315.1|AE004527_2 (AE004527) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/141 (99%), Positives = 140/141 (99%)
Sequence:
ATGGCTGAACACGATTTCCGTTACACCCTGCTCAACCCGCAATACACCCTCAACGAATGCCGCGCGCTCTCC
CCGGGGCGCTACCAGGTCACCGGCACCGGCGGCTCGATCAAGGCCGACGACGTGCTGCTGGTCAGCCTCAAG
GGCAGCAAGACCCTGAGCATGCGCCTGACCGTGGAAAAGGTTCGCCACCTGATCAACCCACCCGGCCAGTGG
CTGGCGGTCGCCCGCGGCCCGGCATTCCGCGAACTGGCGATCCATACCTGGCAGGTCGACTGCGACCAGTGC
CAGGCTCGTCTCGACTTCGAGTTCGCCGTGGACGCCAGTCTCGGTCGCAAGGCCCTGGCGCCGGCCGCCGAA
GAGCGCATTCACGAACTGGGCTGGAGCAGCCGCGAAGGCAAGCACCTGTGCCCGAAATGCCAGTAG
Translation:
MAEHDFRYTLLNPQYTLNECRALSPGRYQVTGTGGSIKADDVLLVSLKGSKTLSMRLTVEKVRHLINPPGQW
LAVARGPAFRELAIHTWQVDCDQCQARLDFEFAVDASLGRKALAPAAEERIHELGWSSREGKHLCPKCQ*
AnnotationID:4603GeneID:4597
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0926
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9195
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26336
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4597

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6965 PA0926_tr translation of PA0926 141 99.29 99.29 0 746.0
185151 gb|AAG04315.1|AE004527_2 (AE004527) hypothetical protein PA0926 [Pseudomonas aeruginosa PAO1] 141 99.29 99.29 0 746.0
185152 gb|AAN67269.1|AE016353_9 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440] 145 71.03 77.93 4 543.0
185153 gb|AAO55210.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 145 68.96 78.62 4 542.0
GC ORFID: 47599How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0926Glimmer Score:
Start: 314297Stop: 313872
Length: 426
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0926 translation of PA0926Homolog Bit Score 291.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5933 (ORF: BLASTX 208.0), t_PA0926 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGAACACGATTTCCGTTACACCCTGCTCAACCCGCAATACACCCTCAACGAATGCCGCGCGCTCTCC
CCGGGGCGCTACCAGGTCACCGGCACCGGCGGCTCGATCAAGGCCGACGACGTGCTGCTGGTCAGCCTCAAG
GGCAGCAAGACCCTGAGCATGCGCCTGACCGTGGAAAAGGTTCGCCACCTGATCAACCCACCCGGCCAGTGG
CTGGCGGTCGCCCGCGGCCCGGCATTCCGCGAACTGGCGATCCATACCTGGCAGGTCGACTGCGACCAGTGC
CAGGCTCGTCTCGACTTCGAGTTCGCCGTGGACGCCAGTCTCGGTCGCAAGGCCCTGGCGCCGGCCGCCGAA
GAGCGCATTCACGAACTGGGCTGGAGCAGCCGCGAAGGCAAGCACCTGTGCCCGAAATGCCAGTAG