ViewGene
Locus Name:
GeneID:
Location:

GeneID:4596
TrivialName: PA14_54400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54400
PAO1 Ortholog Locus:PA0765
Sequence Length:456
Protein Length:151
Start: 4824500
Stop: 4824045
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04154.1|AE004511_7 (AE004511) positive regulator for alginate biosynthesis MucC [Pseudomonas aeruginosa PAO1]
Identities = 150/151 (99%), Positives = 150/151 (99%)
Sequence:
ATGATCGAGGAGCAGGGGCGAGTGGTGGCGACCGAGCCGGGAGCGGTATGGGTCGAGACCGTGCGCCGCAGT
ACCTGCTCGTCCTGCTCGGCCAATGCCGGTTGCGGCCAGGGGCTGATGCAGCGCCTGGGCGTCGGCGCGGGG
CGTGCCCGGGTGCGCGCGTTGAGCGACCTGAGCCTGCGGGTCGGCGATGCGGTCGTCCTAGGAATTCATGAA
GACCTGTTGTTGCGCGCCTCCGTCTTCTTCTATCTTTTCCCTCTGCTCGGGTTTTTCGTGGCAGCATTGCTG
GCGACCCGGGCGGGCCTTGTCGAACCTCTGATCATCGTGTCCGGGCTGGCGGGTTTGCTGGCGGCCTGGCTA
TTGGTGCGTCGGCATGCTCGTCGTCATGCCGATGATCCAGCCTCGCAGCCGGTGGTTCTGCGAGCGCTGATT
TCCGGGCCGTCCGATTCGGCCTGA
Translation:
MIEEQGRVVATEPGAVWVETVRRSTCSSCSANAGCGQGLMQRLGVGAGRARVRALSDLSLRVGDAVVLGIHE
DLLLRASVFFYLFPLLGFFVAALLATRAGLVEPLIIVSGLAGLLAAWLLVRRHARRHADDPASQPVVLRALI
SGPSDSA*
AnnotationID:4602GeneID:4596
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 15:03:28
Gene Name:mucC
Confidence Code:1
GeneProduct:positive regulator for alginate biosynthesis MucC
Cell Localization:()
Synonyms:PA0765
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:AlgM
Functional Category Confidence Code:5
COGs:COG3086, pfam04246
Secondary Functional Category(ies):Cell wall / LPS / capsule; Transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3086, RseC, Positive regulator of sigma E activity. Score: 164, 7e-42
pfam04246, RseC_MucC, Positive regulator of sigma(E). Score: 161, 6e-41






   
Genomic Context:






   
Comment:


















    ReferenceID:9193




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26334




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4596
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6964
                           PA0765_tr
                           translation of PA0765
                           151
                           99.33
                           99.33
                           0
                           745.0
     

     
     
185147
                           gb|AAG04154.1|AE004511_7
                           (AE004511) positive regulator for alginate biosynthesis MucC [Pseudomonas aeruginosa PAO1]
                           151
                           99.33
                           99.33
                           0
                           745.0
     

     
     
185148
                           gb|AAC43717.1|
                           (U49151) MucC [Pseudomonas aeruginosa]
                           151
                           99.33
                           99.33
                           0
                           745.0
     

     
     
185149
                           gb|AAC43675.1|
                           (U32853) MucC [Pseudomonas aeruginosa]
                           151
                           99.33
                           99.33
                           0
                           745.0
     

     
     
185150
                           gb|AAB01512.1|
                           (U30799) MucC [Azotobacter vinelandii]
                           157
                           47.13
                           61.14
                           7
                           353.0
     

     






      

          
GC ORFID: 47598How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0765Glimmer Score: 

          
Start: 129407Stop: 129862

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0765 translation of PA0765Homolog Bit Score 291.0

          
Other Homologs:  t_PA0765 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAGGAGCAGGGGCGAGTGGTGGCGACCGAGCCGGGAGCGGTATGGGTCGAGACCGTGCGCCGCAGT 
ACCTGCTCGTCCTGCTCGGCCAATGCCGGTTGCGGCCAGGGGCTGATGCAGCGCCTGGGCGTCGGCGCGGGG 
CGTGCCCGGGTGCGCGCGTTGAGCGACCTGAGCCTGCGGGTCGGCGATGCGGTCGTCCTAGGAATTCATGAA 
GACCTGTTGTTGCGCGCCTCCGTCTTCTTCTATCTTTTCCCTCTGCTCGGGTTTTTCGTGGCAGCATTGCTG 
GCGACCCGGGCGGGCCTTGTCGAACCTCTGATCATCGTGTCCGGGCTGGCGGGTTTGCTGGCGGCCTGGCTA 
TTGGTGCGTCGGCATGCTCGTCGTCATGCCGATGATCCAGCCTCGCAGCCGGTGGTTCTGCGAGCGCTGATT 
TCCGGGCCGTCCGATTCGGCCTGA