ViewGene
Locus Name:
GeneID:
Location:

GeneID:4595
TrivialName: PA14_55260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55260
PAO1 Ortholog Locus:PA0700
Sequence Length:426
Protein Length:141
Start: 4908122
Stop: 4907697
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04089.1|AE004505_10 (AE004505) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/141 (99%), Positives = 140/141 (99%)
Sequence:
ATGGACGGCATCCCGGAGGCCAGGCGTGGGCCGCGCGCGAGCCGCTGGCGGCACCTGCGCAGTTGGCTGTTC
GGCGAGCCCGAACGGTTCCGCGACGAACGTCAGCGGCTCTGGGTCGCCTACGCCGCATGGCTCGGCGAACAG
GTCCAGCAGCGCCTGGGCGAAGATGCCGAAACCGCGCCGCGGCTGCTGGCCTTCCTGGAGTCGCGGCGCGCG
GCGGGGCAGTTGCCGAATACCGACATCGACCTGCGGGTCTGGCTCGACGAACGCGGCTGGATCGTCCGTCTC
GCCTGCCTGCGCAGCGACGCCGAGCCGATCGAGAATGAACTGCGGCGCGCACTGATGGACCGTTCGTTGCGC
CTGCCGCCGCCGGAACACATGCCGCAGCCGATCGAACTGCGGATTCGCCTCATGCCTGGACGCTAG
Translation:
MDGIPEARRGPRASRWRHLRSWLFGEPERFRDERQRLWVAYAAWLGEQVQQRLGEDAETAPRLLAFLESRRA
AGQLPNTDIDLRVWLDERGWIVRLACLRSDAEPIENELRRALMDRSLRLPPPEHMPQPIELRIRLMPGR*
AnnotationID:4601GeneID:4595
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:18
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0700
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9191




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26332




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4595
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6963
                           PA0700_tr
                           translation of PA0700
                           141
                           99.29
                           99.29
                           0
                           744.0
     

     
     
185146
                           gb|AAG04089.1|AE004505_10
                           (AE004505) hypothetical protein PA0700 [Pseudomonas aeruginosa PAO1]
                           141
                           99.29
                           99.29
                           0
                           744.0
     

     






      

          
GC ORFID: 47597How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0700Glimmer Score: 

          
Start: 45785Stop: 46210

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0700 translation of PA0700Homolog Bit Score 291.0

          
Other Homologs:  t_PA0700 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGGCATCCCGGAGGCCAGGCGTGGGCCGCGCGCGAGCCGCTGGCGGCACCTGCGCAGTTGGCTGTTC 
GGCGAGCCCGAACGGTTCCGCGACGAACGTCAGCGGCTCTGGGTCGCCTACGCCGCATGGCTCGGCGAACAG 
GTCCAGCAGCGCCTGGGCGAAGATGCCGAAACCGCGCCGCGGCTGCTGGCCTTCCTGGAGTCGCGGCGCGCG 
GCGGGGCAGTTGCCGAATACCGACATCGACCTGCGGGTCTGGCTCGACGAACGCGGCTGGATCGTCCGTCTC 
GCCTGCCTGCGCAGCGACGCCGAGCCGATCGAGAATGAACTGCGGCGCGCACTGATGGACCGTTCGTTGCGC 
CTGCCGCCGCCGGAACACATGCCGCAGCCGATCGAACTGCGGATTCGCCTCATGCCTGGACGCTAG