ViewGene
Locus Name:
GeneID:
Location:

GeneID:4594
TrivialName: PA14_06300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06300
PAO1 Ortholog Locus:PA0483
Sequence Length:444
Protein Length:147
Start: 557442
Stop: 557885
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03872.1|AE004486_1 (AE004486) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 146/147 (99%), Positives = 147/147 (100%)
Sequence:
ATGCCCGTCCATGCCGCATCCCTCGCCGATCTCGCCGACCTGGTTCCGCTGTTTTCCGCCTACCTCGACTTC
TACGAAGTGCCGGCGCCGGAAGAGCAGGTCCGCGCATTCCTCGCCGAGCGCCTGCGCCAGGGCGATTCGACC
CTGTTCCTGGCCAGGGATGCCGAGGCGCGGGCGCTGGGCTTCGTCCAACTCTATCCGCTGTTCGCCTCCCTG
GCGCTACGACCTTCGTGGCTGCTCAGCGATCTCTACGTCCGTCCGGAGGCGCGCCGCCAGGGCGTCGGCGAG
GCCCTGATGAACCAGGCCCGGGGTTTCGCCGAAAGCATGGGCGCCTGCGGCCTGCAACTGGAGACGGCGAAG
ACCAACCACGCCGGGCAGTCGCTCTACGAGCGCCTCGGCTATGTCCGTGACGAACAGTTCTACACTTACTGG
CTGCAGCTCTGA
Translation:
MPVHAASLADLADLVPLFSAYLDFYEVPAPEEQVRAFLAERLRQGDSTLFLARDAEARALGFVQLYPLFASL
ALRPSWLLSDLYVRPEARRQGVGEALMNQARGFAESMGACGLQLETAKTNHAGQSLYERLGYVRDEQFYTYW
LQL*
AnnotationID:4600GeneID:4594
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:54
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase, GNAT family
Cell Localization:()
Synonyms:PA0483
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00583, Acetyltransferase (GNAT) family
CD-Length = 82 residues,  98.8% aligned
Score = 58.7 bits (142), Expect = 3e-10
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9189




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26330




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38078




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4594_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4594
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6961
                           PA0483_tr
                           translation of PA0483
                           147
                           99.31
                           99.99
                           0
                           748.0
     

     
     
185141
                           gb|AAG03872.1|AE004486_1
                           (AE004486) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           147
                           99.31
                           99.99
                           0
                           748.0
     

     
     
185144
                           gb|AAO54267.1|
                           (AE016858) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           39.49
                           58.59
                           11
                           282.0
     

     
     
185142
                           gb|AAQ60000.1|
                           (AE016918) probable acetyltransferase [Chromobacterium violaceum ATCC 12472]
                           152
                           39.47
                           57.89
                           6
                           286.0
     

     
     
6962
                           PA4026_tr
                           translation of PA4026
                           153
                           39.21
                           58.16
                           6
                           275.0
     

     






      

          
GC ORFID: 47596How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0483Glimmer Score: 

          
Start: 6358784Stop: 6359227

          
Length: 444


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0483 translation of PA0483Homolog Bit Score 292.0

          
Other Homologs:  t_PA4026 (ORF: BLASTX 109.0), t_PA0483 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGTCCATGCCGCATCCCTCGCCGATCTCGCCGACCTGGTTCCGCTGTTTTCCGCCTACCTCGACTTC 
TACGAAGTGCCGGCGCCGGAAGAGCAGGTCCGCGCATTCCTCGCCGAGCGCCTGCGCCAGGGCGATTCGACC 
CTGTTCCTGGCCAGGGATGCCGAGGCGCGGGCGCTGGGCTTCGTCCAACTCTATCCGCTGTTCGCCTCCCTG 
GCGCTACGACCTTCGTGGCTGCTCAGCGATCTCTACGTCCGTCCGGAGGCGCGCCGCCAGGGCGTCGGCGAG 
GCCCTGATGAACCAGGCCCGGGGTTTCGCCGAAAGCATGGGCGCCTGCGGCCTGCAACTGGAGACGGCGAAG 
ACCAACCACGCCGGGCAGTCGCTCTACGAGCGCCTCGGCTATGTCCGTGACGAACAGTTCTACACTTACTGG 
CTGCAGCTCTGA