ViewGene
Locus Name:
GeneID:
Location:

GeneID:4592
TrivialName: PA14_15000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15000
PAO1 Ortholog Locus:PA3794
Sequence Length:456
Protein Length:151
Start: 1272963
Stop: 1273418
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07181.1|AE004798_4 (AE004798) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/151 (98%), Positives = 149/151 (98%)
Sequence:
ATGAACAGCGACACCGAGAATCCGTTCCGCCCGCCGGAGGCCCGCCTGGACGAGCCTGACGCCACCCATGTC
GAGCCGTTGTACAGGCTTTCCGCGATCGGTCTGGGTACCTTCATCGGCACGCCCCTGGCCGGCGCCTTCCTC
GCGGCGGTGAATCTCCGTCGCCTGGGACGGGCGCAGGAAGTCGGGAAAACCTGGCTGGTCGGCCTCGGTCTG
TTCGTCCTGCTGCCGGTCCTGGGCGCGATACTGCCGGAGAACATCCCCTCGATCGGCTTCACGGTGGCGCAG
ATATTCGGCATGGTCTACTACGCCAAATCAGCCTTCGGTCCGGCCCTGGACAGCCACAAGGCAGCGGGCGGA
GCGTTCATTTCCAACTGGCGGGCGGCGGGGATCGGCCTGCTGTTCATGTTGGTGGTCCTGTCGGTAGCGATC
CCGGTGGTGATGCTGGTGGTGTGA
Translation:
MNSDTENPFRPPEARLDEPDATHVEPLYRLSAIGLGTFIGTPLAGAFLAAVNLRRLGRAQEVGKTWLVGLGL
FVLLPVLGAILPENIPSIGFTVAQIFGMVYYAKSAFGPALDSHKAAGGAFISNWRAAGIGLLFMLVVLSVAI
PVVMLVV*
AnnotationID:4598GeneID:4592
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3794
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26326




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4592
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6959
                           PA3794_tr
                           translation of PA3794
                           151
                           98.67
                           98.67
                           0
                           748.0
     

     
     
185004
                           gb|AAG07181.1|AE004798_4
                           (AE004798) hypothetical protein PA3794 [Pseudomonas aeruginosa PAO1]
                           151
                           98.67
                           98.67
                           0
                           748.0
     

     






      

          
GC ORFID: 47594How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3794Glimmer Score: 

          
Start: 3680974Stop: 3680519

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3794 translation of PA3794Homolog Bit Score 292.0

          
Other Homologs:  t_PA3794 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCGACACCGAGAATCCGTTCCGCCCGCCGGAGGCCCGCCTGGACGAGCCTGACGCCACCCATGTC 
GAGCCGTTGTACAGGCTTTCCGCGATCGGTCTGGGTACCTTCATCGGCACGCCCCTGGCCGGCGCCTTCCTC 
GCGGCGGTGAATCTCCGTCGCCTGGGACGGGCGCAGGAAGTCGGGAAAACCTGGCTGGTCGGCCTCGGTCTG 
TTCGTCCTGCTGCCGGTCCTGGGCGCGATACTGCCGGAGAACATCCCCTCGATCGGCTTCACGGTGGCGCAG 
ATATTCGGCATGGTCTACTACGCCAAATCAGCCTTCGGTCCGGCCCTGGACAGCCACAAGGCAGCGGGCGGA 
GCGTTCATTTCCAACTGGCGGGCGGCGGGGATCGGCCTGCTGTTCATGTTGGTGGTCCTGTCGGTAGCGATC 
CCGGTGGTGATGCTGGTGGTGTGA