ViewGene
Locus Name:
GeneID:
Location:

GeneID:4591
TrivialName: PA14_28390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28390
PAO1 Ortholog Locus:PA2761
Sequence Length:417
Protein Length:138
Start: 2452512
Stop: 2452096
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06149.1|AE004704_3 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 136/138 (98%), Positives = 138/138 (100%)
Sequence:
GTGATAGCATTCGCTCTCGCTTGCCATTGCTTATCGATATCGACAATGCCGTTCCGGAAACACCTTCTGCTC
CCCCTCCTCGGTCTTGCCTTGCTGCTCGGCGGTTGCGGCCCTAGCGTCAGCTACTCCTACATTCCGCCGACC
AGCGATGCCGGCCTGCACTGCGTGAGCCAGTGCAATGCCGAGAAGCGCCAGTGCAAGACCCTCGCCAAGCTG
CAGCAGCGCCAGGACGAGGCGCTCTACCAGGCGCAGAGCACGGCCTACAACTACTGCATGCAGAACAGCGAC
AAGAAGAAGCGCAAGTCCTGCCCCTACCCGCAGCGCAACTTCGATTTCGGCGACGACTGCCAGGACGAGTAC
CGCAGTTGCTACCAGTCCTGCGGCGGCACCATCCGCCGCATCGTCCACCAGGACTGA
Translation:
MIAFALACHCLSISTMPFRKHLLLPLLGLALLLGGCGPSVSYSYIPPTSDAGLHCVSQCNAEKRQCKTLAKL
QQRQDEALYQAQSTAYNYCMQNSDKKKRKSCPYPQRNFDFGDDCQDEYRSCYQSCGGTIRRIVHQD*
AnnotationID:4597GeneID:4591
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2761
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15132




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26324




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4591
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6957
                           PA2761_tr
                           translation of PA2761
                           138
                           98.55
                           99.99
                           0
                           747.0
     

     
     
185002
                           gb|AAG06149.1|AE004704_3
                           (AE004704) hypothetical protein PA2761 [Pseudomonas aeruginosa PAO1]
                           138
                           97.82
                           99.99
                           0
                           744.0
     

     
     
6958
                           PA5404_tr
                           translation of PA5404
                           151
                           36.42
                           51.65
                           30
                           267.0
     

     
     
185003
                           gb|AAG08789.1|AE004953_3
                           (AE004953) hypothetical protein PA5404 [Pseudomonas aeruginosa PAO1]
                           151
                           36.42
                           51.65
                           30
                           267.0
     

     






      

          
GC ORFID: 47593How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2761Glimmer Score: 

          
Start: 2501414Stop: 2501830

          
Length: 417


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2761 translation of PA2761Homolog Bit Score 292.0

          
Other Homologs:  t_PA5404 (ORF: BLASTX 103.0), t_PA2761 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATAGCATTCGCTCTCGCTTGCCATTGCTTATCGATATCGACAATGCCGTTCCGGAAACACCTTCTGCTC 
CCCCTCCTCGGTCTTGCCTTGCTGCTCGGCGGTTGCGGCCCTAGCGTCAGCTACTCCTACATTCCGCCGACC 
AGCGATGCCGGCCTGCACTGCGTGAGCCAGTGCAATGCCGAGAAGCGCCAGTGCAAGACCCTCGCCAAGCTG 
CAGCAGCGCCAGGACGAGGCGCTCTACCAGGCGCAGAGCACGGCCTACAACTACTGCATGCAGAACAGCGAC 
AAGAAGAAGCGCAAGTCCTGCCCCTACCCGCAGCGCAACTTCGATTTCGGCGACGACTGCCAGGACGAGTAC 
CGCAGTTGCTACCAGTCCTGCGGCGGCACCATCCGCCGCATCGTCCACCAGGACTGA