ViewGene
Locus Name:
GeneID:
Location:

GeneID:4590
TrivialName: PA14_40800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40800
PAO1 Ortholog Locus:PA1835
Sequence Length:438
Protein Length:145
Start: 3640779
Stop: 3641216
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05224.1|AE004609_11 (AE004609) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/145 (100%), Positives = 145/145 (100%)
Sequence:
ATGAGTCAGATGATGCAGATGTACCAGCAGGTCGGCCCGGCCCAGTTCAGCGCCATGATCGGCCAGTTCGCA
CCCTATTTCGCCAGCATCGCCCCGCAGTTCGTCGAACTGCGTCCCGGCTATGCCGAAGTCACCTTCCCCAAG
CGCCGCGAGGTGCTGAACCATATCGGCACGGTGCATGCCATCGCCCTGTGCAATGCCGCCGAACTGGCCGCC
GGGACCATGACCGACGCCTCGATTCCCGCCGGCCATCGCTGGATTCCGCGCGGCATGACCGTCGAGTACCTG
GCCAAGGCCACTGGCGACGTGCGCGCGGTGGCCGACGGCAGCCAGATCGACTGGCAAGCCACCGGCAACCTG
GTGGTGCCGGTGGTCGCCTATGTCGACGACAAGCCGGTATTCCGCGCCGAGATCACCATGTACGTCAGCCAG
GCCTGA
Translation:
MSQMMQMYQQVGPAQFSAMIGQFAPYFASIAPQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAA
GTMTDASIPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAYVDDKPVFRAEITMYVSQ
A*
AnnotationID:4596GeneID:4590
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1835
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9181




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26322




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37059




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4590_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4590
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6956
                           PA1835_tr
                           translation of PA1835
                           145
                           99.99
                           99.99
                           0
                           748.0
     

     
     
185000
                           gb|AAG05224.1|AE004609_11
                           (AE004609) hypothetical protein PA1835 [Pseudomonas aeruginosa PAO1]
                           145
                           99.99
                           99.99
                           0
                           748.0
     

     
     
185001
                           gb|AAM42985.1|
                           (AE012493) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           160
                           46.87
                           60.00
                           17
                           329.0
     

     






      

          
GC ORFID: 47592How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1835Glimmer Score: 

          
Start: 1313131Stop: 1312694

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1835 translation of PA1835Homolog Bit Score 292.0

          
Other Homologs:  t_PA1835 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCAGATGATGCAGATGTACCAGCAGGTCGGCCCGGCCCAGTTCAGCGCCATGATCGGCCAGTTCGCA 
CCCTATTTCGCCAGCATCGCCCCGCAGTTCGTCGAACTGCGTCCCGGCTATGCCGAAGTCACCTTCCCCAAG 
CGCCGCGAGGTGCTGAACCATATCGGCACGGTGCATGCCATCGCCCTGTGCAATGCCGCCGAACTGGCCGCC 
GGGACCATGACCGACGCCTCGATTCCCGCCGGCCATCGCTGGATTCCGCGCGGCATGACCGTCGAGTACCTG 
GCCAAGGCCACTGGCGACGTGCGCGCGGTGGCCGACGGCAGCCAGATCGACTGGCAAGCCACCGGCAACCTG 
GTGGTGCCGGTGGTCGCCTATGTCGACGACAAGCCGGTATTCCGCGCCGAGATCACCATGTACGTCAGCCAG 
GCCTGA