ViewGene
Locus Name:
GeneID:
Location:

GeneID:4589
TrivialName: PA14_43600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43600
PAO1 Ortholog Locus:PA1618
Sequence Length:438
Protein Length:145
Start: 3881066
Stop: 3880629
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05007.1|AE004589_10 (AE004589) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 145/145 (100%), Positives = 145/145 (100%)
Sequence:
ATGAGCCTCTGGCGACAAACGCCCGACCTGGAGCAACTGAACGCCTCGCAGAAGAACAGCATCGGCGACCTG
CTTGGCATCCGCTTCGAAGCCTTCGACGACGAGTCGCTGACCGCCAGCATGCCGGTCGACTCGCGTACCCAC
CAGCCGTTCGGCCTGCTGCACGGCGGCGCCTCGGTGGTCCTCGCGGAAAGCCTGGGCTCGATGGCCAGCTAC
CTGTGCGTCGACACCAGCCAGTACTACTGCGTCGGCCTGGAAGTGAACGCCAACCACCTGCGCGGCCTGCGC
AGCGGCCGGGTCACTGCGGTGGCCAGGGCGATCCACCTGGGGCGTACCACCCATGTCTGGGACATCCGCCTC
AGTGGCGACGACGGCAAGCCGAGCTGCATCGCCCGCCTGACCATGGCGGTGGTGCCGCTGGCGGGCAGGGCG
GGCTGA
Translation:
MSLWRQTPDLEQLNASQKNSIGDLLGIRFEAFDDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASY
LCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPLAGRA
G*
AnnotationID:4595GeneID:4589
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 10:10:43
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA1618
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55732.1| (AE016863) 4-hydroxybenzoyl-CoA thioesterase domain protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 147

 Score =  218 bits (556), Expect = 6e-57
 Identities = 102/139 (73%), Positives = 123/139 (88%)

>gb|AAN80541.1|AE016761_116 (AE016761) Hypothetical protein ydiI [Escherichia coli CFT073]
          Length = 136

 Score =  143 bits (360), Expect = 3e-34
 Identities = 72/136 (52%), Positives = 94/136 (69%), Gaps = 1/136 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26320




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36511




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:4589_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4589
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6955
                           PA1618_tr
                           translation of PA1618
                           145
                           99.99
                           99.99
                           0
                           748.0
     

     
     
184948
                           gb|AAG05007.1|AE004589_10
                           (AE004589) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           145
                           99.99
                           99.99
                           0
                           748.0
     

     
     
184949
                           gb|AAO55732.1|
                           (AE016863) 4-hydroxybenzoyl-CoA thioesterase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           151
                           68.21
                           82.11
                           10
                           548.0
     

     
     
184950
                           gb|AAM35088.1|
                           (AE011644) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           145
                           52.41
                           68.96
                           3
                           390.0
     

     
     
184952
                           gb|AAM85499.1|AE013796_2
                           (AE013796) hypothetical protein [Yersinia pestis KIM]
                           145
                           52.41
                           63.44
                           7
                           370.0
     

     






      

          
GC ORFID: 47591How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1618Glimmer Score: 

          
Start: 1072843Stop: 1073280

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1618 translation of PA1618Homolog Bit Score 292.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1011 (ORF: BLASTX 229.0), t_PA1618 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTCTGGCGACAAACGCCCGACCTGGAGCAACTGAACGCCTCGCAGAAGAACAGCATCGGCGACCTG 
CTTGGCATCCGCTTCGAAGCCTTCGACGACGAGTCGCTGACCGCCAGCATGCCGGTCGACTCGCGTACCCAC 
CAGCCGTTCGGCCTGCTGCACGGCGGCGCCTCGGTGGTCCTCGCGGAAAGCCTGGGCTCGATGGCCAGCTAC 
CTGTGCGTCGACACCAGCCAGTACTACTGCGTCGGCCTGGAAGTGAACGCCAACCACCTGCGCGGCCTGCGC 
AGCGGCCGGGTCACTGCGGTGGCCAGGGCGATCCACCTGGGGCGTACCACCCATGTCTGGGACATCCGCCTC 
AGTGGCGACGACGGCAAGCCGAGCTGCATCGCCCGCCTGACCATGGCGGTGGTGCCGCTGGCGGGCAGGGCG 
GGCTGA