ViewGene
Locus Name:
GeneID:
Location:

GeneID:4587
TrivialName: PA14_51560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51560
PAO1 Ortholog Locus:
Sequence Length:450
Protein Length:149
Start: 4585439
Stop: 4584990
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82956.1| (AY273870) acetyltransferase [Pseudomonas aeruginosa]
Identities = 149/149 (100%), Positives = 149/149 (100%)
Sequence:
ATGGAATGCCACGTTCGTCCCGCCACGAGCAGAGATGCAGCAGCGATAAGCTGCGTAGTTATAGCCGCCCTG
CGTGAGTCAAATTCACAGGACTATCCGCCTGATGTGATCGCTCAGGTTGAGCAGAGCTTTTCTCCTGAAGCC
ATCACCACACAGCTTACGAAGCGTAGGGTCTTCGTAGCCTTATTGGGCGAAAACATTATTGGCACTGCCGGT
CTCGACGGTGACGTCGTCAGAAGTGTTTTCGTTGACCCAGCTCACCAGAAAGGCGGTATCGGGCGGCATTTG
ATGGATGTCATTCATACAACTGCTGCCAGCGCGGGAGTTGGAGCTGTACGTGTGCCATCGTCGATTACAGCT
GAAAGGTTTTATACCGCATTGGGTTATCAGAAAATCCGCGACGAGTTTCATGGGGCGGAGCGCACCATCGTT
ATGGAGAAGCGGCTGTAG
Translation:
MECHVRPATSRDAAAISCVVIAALRESNSQDYPPDVIAQVEQSFSPEAITTQLTKRRVFVALLGENIIGTAG
LDGDVVRSVFVDPAHQKGGIGRHLMDVIHTTAASAGVGAVRVPSSITAERFYTALGYQKIRDEFHGAERTIV
MEKRL*
AnnotationID:4593GeneID:4587
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:02
Gene Name:RS11
Confidence Code:3
GeneProduct:possible acetyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. Score: 44.5, 6e-06
COG0456, RimI, Acetyltransferases [General function prediction only]. Score: 40.4, 9e-05






   
Genomic Context:






   
Comment:


















    ReferenceID:9175




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26316




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4587
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
184942
                           gb|AAP82956.1|
                           (AY273870) acetyltransferase [Pseudomonas aeruginosa]
                           149
                           99.99
                           99.99
                           0
                           749.0
     

     
     
184943
                           gb|AAN66276.1|AE016256_3
                           (AE016776) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           149
                           95.97
                           97.98
                           0
                           718.0
     

     
     
184944
                           gb|AAO56559.1|
                           (AE016867) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           151
                           60.26
                           74.83
                           2
                           457.0
     

     






      

          
GC ORFID: 47589How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS11Glimmer Score: 

          
Start: 368468Stop: 368917

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RS11 149 Homolog: All3024 / Hypothetical protein / Nostoc sp.  / PCC 7120 (BAB74723) translation of RS11Homolog Bit Score 293.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5452 (ORF: BLASTX 147.0)

          
GC ORF Sequence

           
ATGGAATGCCACGTTCGTCCCGCCACGAGCAGAGATGCAGCAGCGATAAGCTGCGTAGTTATAGCCGCCCTG 
CGTGAGTCAAATTCACAGGACTATCCGCCTGATGTGATCGCTCAGGTTGAGCAGAGCTTTTCTCCTGAAGCC 
ATCACCACACAGCTTACGAAGCGTAGGGTCTTCGTAGCCTTATTGGGCGAAAACATTATTGGCACTGCCGGT 
CTCGACGGTGACGTCGTCAGAAGTGTTTTCGTTGACCCAGCTCACCAGAAAGGCGGTATCGGGCGGCATTTG 
ATGGATGTCATTCATACAACTGCTGCCAGCGCGGGAGTTGGAGCTGTACGTGTGCCATCGTCGATTACAGCT 
GAAAGGTTTTATACCGCATTGGGTTATCAGAAAATCCGCGACGAGTTTCATGGGGCGGAGCGCACCATCGTT 
ATGGAGAAGCGGCTGTAG