ViewGene
Locus Name:
GeneID:
Location:

GeneID:4585
TrivialName: PA14_05280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05280
PAO1 Ortholog Locus:PA0404
Sequence Length:435
Protein Length:144
Start: 461511
Stop: 461077
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03793.1|AE004477_10 (AE004477) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/144 (100%), Positives = 144/144 (100%)
Sequence:
ATGGCCAGCGACAAGCCGCTGCGCCTGCTGCTGGGCTTCGACTACGGCACCCGGCAGATCGGCGTCGCCGTC
GGCCAGGCGGTGACCGGCCAGGCCCGCGAGCTGTGCGTATTGAAGGCGCAGAACGGCGTGCCGGACTGGAAC
CGGGTGGAAGCGCTGATCAAGGAATGGCAGCCGGACGCCATCGTCGTCGGCCTGCCGCTGAACATGGACGGC
AGCCCAAGCGAGATGAGCGAGCGCGCGGAAAAGTTCGGCCGCCGCCTCAACGGCCGTTTCAACCTGCCGGTC
TTTACCCACGACGAACGCCTCACGACCTATGCCGCCAAGGGCGAGCGCCTGGCTCAGGGCCAGCGCGACGGC
TACCGCGAGCGACCGGTGGACGCCCTGGCCGCCGCCCTGCTGCTGGAAGGCTGGCTGGCCGAACACCCGGAT
TGA
Translation:
MASDKPLRLLLGFDYGTRQIGVAVGQAVTGQARELCVLKAQNGVPDWNRVEALIKEWQPDAIVVGLPLNMDG
SPSEMSERAEKFGRRLNGRFNLPVFTHDERLTTYAAKGERLAQGQRDGYRERPVDALAAALLLEGWLAEHPD
*
AnnotationID:4591GeneID:4585
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 22:10:26
Gene Name:yqgF
Confidence Code:3
GeneProduct:putative ribonuclease
Cell Localization:()
Synonyms:PA0404
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00732
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21972.1| (AE008842) putative endonuclease involved in recombination
           [Salmonella typhimurium LT2]
          Length = 138

 Score =  139 bits (349), Expect = 6e-33
 Identities = 64/132 (48%), Positives = 89/132 (67%)








 
Structural Features:
smart00732, YqgFc, Likely ribonuclease with RNase H fold.
CD-Length = 99 residues, 100.0% aligned
Score =  106 bits (267), Expect = 9e-25
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 2/101 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9171




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26312




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33722




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4585_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4585
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6952
                           PA0404_tr
                           translation of PA0404
                           144
                           99.99
                           99.99
                           0
                           751.0
     

     
     
184903
                           gb|AAG03793.1|AE004477_10
                           (AE004477) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           144
                           99.99
                           99.99
                           0
                           751.0
     

     
     
184906
                           gb|AAN70562.1|AE016699_3
                           (AE016792) conserved hypothetical protein TIGR00250 [Pseudomonas putida KT2440]
                           145
                           76.55
                           85.51
                           5
                           570.0
     

     
     
184904
                           gb|AAO58466.1|
                           (AE016874) conserved hypothetical protein TIGR00250 [Pseudomonas syringae pv. tomato str. DC3000]
                           149
                           73.82
                           86.57
                           8
                           583.0
     

     
     
184905
                           gb|AAG15556.1|
                           (AY007523) hypothetical protein [Pseudomonas fluorescens]
                           149
                           71.81
                           82.55
                           9
                           570.0
     

     






      

          
GC ORFID: 47587How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0404Glimmer Score: 

          
Start: 6262853Stop: 6262419

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0404 translation of PA0404Homolog Bit Score 293.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3712 (ORF: BLASTX 227.0), t_PA0404 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAGCGACAAGCCGCTGCGCCTGCTGCTGGGCTTCGACTACGGCACCCGGCAGATCGGCGTCGCCGTC 
GGCCAGGCGGTGACCGGCCAGGCCCGCGAGCTGTGCGTATTGAAGGCGCAGAACGGCGTGCCGGACTGGAAC 
CGGGTGGAAGCGCTGATCAAGGAATGGCAGCCGGACGCCATCGTCGTCGGCCTGCCGCTGAACATGGACGGC 
AGCCCAAGCGAGATGAGCGAGCGCGCGGAAAAGTTCGGCCGCCGCCTCAACGGCCGTTTCAACCTGCCGGTC 
TTTACCCACGACGAACGCCTCACGACCTATGCCGCCAAGGGCGAGCGCCTGGCTCAGGGCCAGCGCGACGGC 
TACCGCGAGCGACCGGTGGACGCCCTGGCCGCCGCCCTGCTGCTGGAAGGCTGGCTGGCCGAACACCCGGAT 
TGA