ViewGene

Locus Name:
GeneID:
Location:

GeneID:4584
TrivialName: PA14_00650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00650
PAO1 Ortholog Locus:PA0052
Sequence Length:429
Protein Length:142
Start: 66978
Stop: 66550
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03442.1|AE004445_3 (AE004445) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/142 (100%), Positives = 142/142 (100%)
Sequence:
ATGGACCTTCGCCCCAGCCACGTGCATGTGTTCCCACCCAGCCGCGACCTCCCGGCCGCAACCAGTCCGCAC
CGCGAAACCCTGCTGCGCAGCGGCTGCGCCTGGAACGGCTCGCTCTACCTCGGCTATCCCCTCGGCCAGCCG
CAGCTCACCGTGCAGCGCCTGAGCCTGGCCGCCCACGAACGCCTGGACTGGCAGGTCCATCCGATGCCCAGC
GCGCTTTACGTGCTCAAGGGCGAACTGCGCCTGGAGACCCGCGACGGAGCCCAGAGCACGCGGGTGCTGGAA
GGCGAGGCGGCGGGTTGCCTGATGAACATCATCCATCGCCTGATAGCCGGGGCCGAACCGGTGGAAGCCCTG
CTGTTCCATGCCGGCGTGGAAGGCATGCCGGTGGGGCTCGGCGAACGCGGCGAAATGCCCGACGCCTGA
Translation:
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPS
ALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHRLIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA*
AnnotationID:4590GeneID:4584
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 15:03:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0052
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9169
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26310
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33404
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4584_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4584

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6951 PA0052_tr translation of PA0052 142 99.99 99.99 0 749.0
184901 gb|AAG03442.1|AE004445_3 (AE004445) hypothetical protein PA0052 [Pseudomonas aeruginosa PAO1] 142 99.99 99.99 0 749.0
184902 gb|AAQ60284.1| (AE016919) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 150 36.66 55.33 15 259.0
GC ORFID: 47586How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0052Glimmer Score:
Start: 5868315Stop: 5867887
Length: 429
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0052 translation of PA0052Homolog Bit Score 293.0
Other Homologs: t_PA0052 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCTTCGCCCCAGCCACGTGCATGTGTTCCCACCCAGCCGCGACCTCCCGGCCGCAACCAGTCCGCAC
CGCGAAACCCTGCTGCGCAGCGGCTGCGCCTGGAACGGCTCGCTCTACCTCGGCTATCCCCTCGGCCAGCCG
CAGCTCACCGTGCAGCGCCTGAGCCTGGCCGCCCACGAACGCCTGGACTGGCAGGTCCATCCGATGCCCAGC
GCGCTTTACGTGCTCAAGGGCGAACTGCGCCTGGAGACCCGCGACGGAGCCCAGAGCACGCGGGTGCTGGAA
GGCGAGGCGGCGGGTTGCCTGATGAACATCATCCATCGCCTGATAGCCGGGGCCGAACCGGTGGAAGCCCTG
CTGTTCCATGCCGGCGTGGAAGGCATGCCGGTGGGGCTCGGCGAACGCGGCGAAATGCCCGACGCCTGA