ViewGene
Locus Name:
GeneID:
Location:

GeneID:4583
TrivialName: PA14_69780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69780
PAO1 Ortholog Locus:PA5286
Sequence Length:426
Protein Length:141
Start: 6224068
Stop: 6223643
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08671.1|AE004941_4 (AE004941) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGTGGCAGCAGACCCTGATCACCTTGCGCCCGCGTCCGCGGGGCTTTCACCTCGTCACCGAGGAGATACTC
GACGCCTTGCCGGAGCTTCGGCGGTGCCGGGTCGGCCTGCTGCACCTGCTTTTGCAACATACGTCGGCTTCA
CTGACCCTGAATGAAAATGCCGATCCTGCCGTACGCCGGGATTTCGAGCGTTTTTTCGAGCGGCTGGCGCCA
CGCGGCGAAGTCGGCTATGAACACAACGACGAAGGTCCGGACGACCTTCCGGCGCATTTCAAGGCCAGCCTG
CTGGGCTGCCAACTGACCCTGCCGATACAGTCGGGAGGGTTGGCACTGGGCACCTGGCAGGGGATCTATCTC
GGTGAACACCGGGACAGGGGCGGGGCACGGCGCGTGCTCGCCACCTGGCAGGGCGAGTCAGTATGA
Translation:
MWQQTLITLRPRPRGFHLVTEEILDALPELRRCRVGLLHLLLQHTSASLTLNENADPAVRRDFERFFERLAP
RGEVGYEHNDEGPDDLPAHFKASLLGCQLTLPIQSGGLALGTWQGIYLGEHRDRGGARRVLATWQGESV*
AnnotationID:4589GeneID:4583
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5286
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26309




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4583
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6950
                           PA5286_tr
                           translation of PA5286
                           141
                           99.99
                           99.99
                           0
                           750.0
     

     
     
184872
                           gb|AAG08671.1|AE004941_4
                           (AE004941) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           750.0
     

     
     
184873
                           gb|AAL83556.1|AF414717_6
                           (AF414717) PA5286-like protein [Pseudomonas stutzeri]
                           141
                           77.30
                           90.07
                           0
                           599.0
     

     
     
184874
                           gb|AAO53765.1|
                           (AE016856) conserved hypothetical protein TIGR00149 [Pseudomonas syringae pv. tomato str. DC3000]
                           141
                           77.30
                           85.10
                           0
                           580.0
     

     
     
184875
                           gb|AAF93546.1|
                           (AE004125) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           141
                           65.24
                           75.88
                           2
                           499.0
     

     






      

          
GC ORFID: 47585How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5286Glimmer Score: 

          
Start: 5487755Stop: 5487330

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5286 translation of PA5286Homolog Bit Score 293.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3961 (ORF: BLASTX 231.0), t_PA5286 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTGGCAGCAGACCCTGATCACCTTGCGCCCGCGTCCGCGGGGCTTTCACCTCGTCACCGAGGAGATACTC 
GACGCCTTGCCGGAGCTTCGGCGGTGCCGGGTCGGCCTGCTGCACCTGCTTTTGCAACATACGTCGGCTTCA 
CTGACCCTGAATGAAAATGCCGATCCTGCCGTACGCCGGGATTTCGAGCGTTTTTTCGAGCGGCTGGCGCCA 
CGCGGCGAAGTCGGCTATGAACACAACGACGAAGGTCCGGACGACCTTCCGGCGCATTTCAAGGCCAGCCTG 
CTGGGCTGCCAACTGACCCTGCCGATACAGTCGGGAGGGTTGGCACTGGGCACCTGGCAGGGGATCTATCTC 
GGTGAACACCGGGACAGGGGCGGGGCACGGCGCGTGCTCGCCACCTGGCAGGGCGAGTCAGTATGA