ViewGene
Locus Name:
GeneID:
Location:

GeneID:4582
TrivialName: PA14_68450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68450
PAO1 Ortholog Locus:PA5182
Sequence Length:414
Protein Length:137
Start: 6107697
Stop: 6108110
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08567.1|AE004931_4 (AE004931) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 136/137 (99%), Positives = 137/137 (100%)
Sequence:
GTGTTGGGTTCGGTCGTCGGCGATGCGGTCGGCGGCAGCACTGGCGCCGCGATCGGTAGCGGCATCGGTGGC
GCTGCGGGCGGTGCAGTCGGCGCCGGACGCGGTAACAAGACCGAAGCGGCGATCGGCGGCGGCCTCGGTGCC
GCAGGCGGCAACGTCATCGGCCGGCAGATCGGTGGCAGCACCGGTGGCCTGATCGGCGCGGCCCTCGGCGGC
GCCGGCGGCGGCGCGCTGGGCAACCATTATGGCGACGGCAACCGCCGCTACGACGACGATGACGACTACCGC
GACCGTCGCTACTACCGCCGCGCCGGCTATCGCGATGGCTATTACCGGCATGACAACGGCCATCACTATGGC
CGGTACAAGAAGTGGAAGCGCCATAAGCATCATCGTCGCTACTACGACGACTGA
Translation:
MLGSVVGDAVGGSTGAAIGSGIGGAAGGAVGAGRGNKTEAAIGGGLGAAGGNVIGRQIGGSTGGLIGAALGG
AGGGALGNHYGDGNRRYDDDDDYRDRRYYRRAGYRDGYYRHDNGHHYGRYKKWKRHKHHRRYYDD*
AnnotationID:4588GeneID:4582
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 16:04:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5182
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15130




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26307




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34865




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4582_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4582
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6948
                           PA5182_tr
                           translation of PA5182
                           137
                           99.27
                           99.99
                           0
                           750.0
     

     
     
184867
                           gb|AAG08567.1|AE004931_4
                           (AE004931) hypothetical protein PA5182 [Pseudomonas aeruginosa PAO1]
                           137
                           98.54
                           99.99
                           0
                           747.0
     

     
     
184868
                           gb|AAN65886.1|AE016216_7
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           172
                           47.09
                           56.97
                           47
                           409.0
     

     
     
184869
                           gb|AAO58830.1|
                           (AE016875) hypothetical protein PSPTO5408 [Pseudomonas syringae pv. tomato str. DC3000]
                           188
                           43.08
                           51.59
                           71
                           384.0
     

     
     
6949
                           PA5183_tr
                           translation of PA5183
                           171
                           40.93
                           49.12
                           70
                           338.0
     

     






      

          
GC ORFID: 47584How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5182Glimmer Score: 

          
Start: 5371383Stop: 5371796

          
Length: 414


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5182 translation of PA5182Homolog Bit Score 293.0

          
Other Homologs:  t_PA5183 (ORF: BLASTX 153.0), t_PA5182 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTGGGTTCGGTCGTCGGCGATGCGGTCGGCGGCAGCACTGGCGCCGCGATCGGTAGCGGCATCGGTGGC 
GCTGCGGGCGGTGCAGTCGGCGCCGGACGCGGTAACAAGACCGAAGCGGCGATCGGCGGCGGCCTCGGTGCC 
GCAGGCGGCAACGTCATCGGCCGGCAGATCGGTGGCAGCACCGGTGGCCTGATCGGCGCGGCCCTCGGCGGC 
GCCGGCGGCGGCGCGCTGGGCAACCATTATGGCGACGGCAACCGCCGCTACGACGACGATGACGACTACCGC 
GACCGTCGCTACTACCGCCGCGCCGGCTATCGCGATGGCTATTACCGGCATGACAACGGCCATCACTATGGC 
CGGTACAAGAAGTGGAAGCGCCATAAGCATCATCGTCGCTACTACGACGACTGA