ViewGene
Locus Name:
GeneID:
Location:

GeneID:4581
TrivialName: PA14_66450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66450
PAO1 Ortholog Locus:PA5026
Sequence Length:453
Protein Length:150
Start: 5928416
Stop: 5928868
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08411.1|AE004915_6 (AE004915) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/150 (99%), Positives = 150/150 (100%)
Sequence:
ATGCCACTGCCCACCGAACTCGCCAGGCACCTGACCGAAGAAAAGATCGCCTTCGTCCAGCGCAGCGGACTC
AGGGCGGAAGTCCTCGAACCCGGCTACGTGCGCCTGCGCATGCCGGGCGCCGGCAACGAGAACCACATCGGC
AGCATGTACGCCGGGGCGCTCTTCACCCTCGCCGAAATTCCCGGTGGCGCGCTGTTTCTGACCAGCTTCGAC
AGCGCCCGCTTCTATCCCATCGTCAAGGAGATGACCTTGCGCTTCCGCCGCCCGGCCAAGGGCGACATACGC
GTCGAGGCACGCCTGGATGCCGAGCGCATCCGCCAACTGGAAACCGAGGCCGGGGAGCGCGGCAAGGCCGAA
TACAGCCTCGAACTGCAACTCACCGACGAGCAGGGCGAGGTAGTGGCGGAAAGCGCCGCGCTGTACCAGCTA
CGCAGCCACGCGCGACCCTGA
Translation:
MPLPTELARHLTEEKIAFVQRSGLRAEVLEPGYVRLRMPGAGNENHIGSMYAGALFTLAEIPGGALFLTSFD
SARFYPIVKEMTLRFRRPAKGDIRVEARLDAERIRQLETEAGERGKAEYSLELQLTDEQGEVVAESAALYQL
RSHARP*
AnnotationID:4587GeneID:4581
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 14:02:35
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5026
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9163




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26305




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34987




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4581_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4581
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6947
                           PA5026_tr
                           translation of PA5026
                           150
                           99.33
                           99.99
                           0
                           751.0
     

     
     
184866
                           gb|AAG08411.1|AE004915_6
                           (AE004915) hypothetical protein PA5026 [Pseudomonas aeruginosa PAO1]
                           150
                           99.33
                           99.99
                           0
                           751.0
     

     






      

          
GC ORFID: 47583How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5026Glimmer Score: 

          
Start: 5192099Stop: 5192551

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5026 translation of PA5026Homolog Bit Score 293.0

          
Other Homologs:  t_PA5026 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCACTGCCCACCGAACTCGCCAGGCACCTGACCGAAGAAAAGATCGCCTTCGTCCAGCGCAGCGGACTC 
AGGGCGGAAGTCCTCGAACCCGGCTACGTGCGCCTGCGCATGCCGGGCGCCGGCAACGAGAACCACATCGGC 
AGCATGTACGCCGGGGCGCTCTTCACCCTCGCCGAAATTCCCGGTGGCGCGCTGTTTCTGACCAGCTTCGAC 
AGCGCCCGCTTCTATCCCATCGTCAAGGAGATGACCTTGCGCTTCCGCCGCCCGGCCAAGGGCGACATACGC 
GTCGAGGCACGCCTGGATGCCGAGCGCATCCGCCAACTGGAAACCGAGGCCGGGGAGCGCGGCAAGGCCGAA 
TACAGCCTCGAACTGCAACTCACCGACGAGCAGGGCGAGGTAGTGGCGGAAAGCGCCGCGCTGTACCAGCTA 
CGCAGCCACGCGCGACCCTGA