ViewGene
Locus Name:
GeneID:
Location:

GeneID:4580
TrivialName: PA14_63840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63840
PAO1 Ortholog Locus:PA4828
Sequence Length:456
Protein Length:151
Start: 5690503
Stop: 5690958
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08213.1|AE004896_3 (AE004896) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/151 (100%), Positives = 151/151 (100%)
Sequence:
ATGGCCCAGGCAATCGTCGCCTACCTGCACTACCTGTCGATCTTCCTGCTGTTCGCCCTGCTGGTGTTGCAG
CACCGCCTGCTGCGCCTGCCGCTGGACCTGGAGCGCGCCCGCAGCCTGGCGGCGATCGACCGCGGCTACGGC
CTCTGCGCCCTGGCGGTACTGGCCAGCGGGCTGGCGCGGGTGCTGTGGTACGGCAAGGGTGTCGACTACTAC
CTGCACAATGGCCTGTTCCACGCCAAGGTCGGGCTATTCGTCCTCGCTGCCCTGGTCTCGCTGTTGCCGACC
GTTACCTTCCTTGGCTGGCGCGGCGCCCTCAAGGCCGGCGAAGTGCCGGCGGTGACGCCGGCCCGGGGCCGG
CGGGTGGTCATGGCGGTGCGCCTGCAACTGCTCCTGCTGCTGGTCATTCCGTTGCTGGCTACGCTGATGGCG
CGCGGCTTCGGCATGCGCGGCTGA
Translation:
MAQAIVAYLHYLSIFLLFALLVLQHRLLRLPLDLERARSLAAIDRGYGLCALAVLASGLARVLWYGKGVDYY
LHNGLFHAKVGLFVLAALVSLLPTVTFLGWRGALKAGEVPAVTPARGRRVVMAVRLQLLLLLVIPLLATLMA
RGFGMRG*
AnnotationID:4586GeneID:4580
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:00
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4828
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3556
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3556, COG3556, Predicted membrane protein
CD-Length = 150 residues,  99.3% aligned
Score =  176 bits (448), Expect = 1e-45
Identities = 87/149 (58%), Positives = 104/149 (69%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9161




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26303




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35221




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4580_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4580
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6946
                           PA4828_tr
                           translation of PA4828
                           151
                           99.99
                           99.99
                           0
                           749.0
     

     
     
184858
                           gb|AAG08213.1|AE004896_3
                           (AE004896) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           151
                           99.99
                           99.99
                           0
                           749.0
     

     
     
184863
                           emb|CAD14497.1|
                           (AL646061) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           155
                           45.16
                           59.35
                           9
                           279.0
     

     
     
184864
                           emb|CAE35648.1|
                           (BX640448) putative inner membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           157
                           42.03
                           57.96
                           13
                           276.0
     

     
     
184865
                           emb|CAE38508.1|
                           (BX640433) putative inner membrane protein [Bordetella parapertussis]
                           157
                           42.03
                           57.96
                           13
                           276.0
     

     






      

          
GC ORFID: 47582How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4828Glimmer Score: 

          
Start: 4954183Stop: 4954638

          
Length: 456


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4828 translation of PA4828Homolog Bit Score 293.0

          
Other Homologs:  t_PA4828 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCAGGCAATCGTCGCCTACCTGCACTACCTGTCGATCTTCCTGCTGTTCGCCCTGCTGGTGTTGCAG 
CACCGCCTGCTGCGCCTGCCGCTGGACCTGGAGCGCGCCCGCAGCCTGGCGGCGATCGACCGCGGCTACGGC 
CTCTGCGCCCTGGCGGTACTGGCCAGCGGGCTGGCGCGGGTGCTGTGGTACGGCAAGGGTGTCGACTACTAC 
CTGCACAATGGCCTGTTCCACGCCAAGGTCGGGCTATTCGTCCTCGCTGCCCTGGTCTCGCTGTTGCCGACC 
GTTACCTTCCTTGGCTGGCGCGGCGCCCTCAAGGCCGGCGAAGTGCCGGCGGTGACGCCGGCCCGGGGCCGG 
CGGGTGGTCATGGCGGTGCGCCTGCAACTGCTCCTGCTGCTGGTCATTCCGTTGCTGGCTACGCTGATGGCG 
CGCGGCTTCGGCATGCGCGGCTGA