ViewGene
Locus Name:
GeneID:
Location:

GeneID:458
TrivialName: PA14_64060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64060
PAO1 Ortholog Locus:PA4844
Sequence Length:1974
Protein Length:657
Start: 5708437
Stop: 5710410
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08229.1|AE004897_7 (AE004897) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 651/657 (99%), Positives = 653/657 (99%)
Sequence:
ATGCGCCTCAAGCAACTCACCAATCTCAACACCCTGCTCCTGCTCACCGTCTGCCTCGCCCTGGGAATCACC
CTGTGGTGGTCGCAACGCGCCATGGAGCGCCCGTTCCAGTTGCTCGACCAGTACCTGGAGCTGTCGCAGCGC
TTCGACGAACAGGTCGCGCGCAACGTCCGCCAGTACCTCGGCAGCGGCGACGCCGTACGCCAGCAGGCCGCG
CTGCAGGCCCTGGAAAGCCTCGCCGAGGCCTTGCCGGAGCTACCGCCGGACCTCGCCCGGACCCTCGCGCCA
AGCCTCGCGGAGTTGCGCGAATTCAGCGCCGGCGACCTGCTCGCCGCCGGCAAGCTCGCCGGCGACCCGCAG
GGCCTGCTGCTACAGGCCGAGCGCGACCTCGCCGGCAACCTGGAACAATGGTCCGCCTACCTGGACGCCGCG
ACGGAGCAGCCCCAGGCCGGCGCCTACCGCACCCCGCTGCTGCTCGCCAGCCTGCACCTGACCCGCCTCAGC
CTGGCCCGCGCCAAGCTGGTGGAAAGCGCCAACCCGGCCCTGGCCGGCGACGTCGAGCGCGAACTGGCCAAC
CTGCGCGAGCAGGCCGGGCGGATCGAGGCCTTGCCGTTGCTCGGCGTGCTCGAGGAGCAACGCTCGGCCAGC
GACGACTTCGCCGCCATGATGGGGCTGGCCGGCGACGCCGAGGCTGGCGCCGGCAATGCCGAAGACCGCGGC
GTGGCGCTGCGGCGCGAACTCGCCAGCCTGCTGCAACGCTATCCGGACGAGTTGCGCCGCACCCGCGACCTG
ATCGAGCGTCGCCAGCAACTGTCCGCCGACACCGGCGCCAGACTGGACGCGGTGCGCCAGGCCCTGGCCACC
CTGGAGCCGCAGGTGCGCGGCGAGCGCCAGCGCCTGCAAAGCCAGGTACGCCTGATCCAGGGTGGGATGATC
GCCCTGATCCTGCTCATCGCCCTCGCCATCGACAGCCTGCAAAGGCGCCTGGCACGGGTCCTCGGGCAACTG
GTGCCGGCGCTCTCGGCCTGGGCCGACGGCGACTTCTCACGCCCCATATCCCTGCGTACCCGCACCGAGGAC
CTGCGCAACCTGGAAGATTCGCTGAACCGCCTGCGCAGCTTCCTCGCCGAGCTGGTCGGCGCGATCCACCGC
CGCGCCGAACAGGTCGCCGGCAGCAGCCAGACCCTGGCCGAGGTCAGCAGCGGCCTGCATGCCGGGGTCGAG
CGCCAGGCCGGCGATACCGGGCAGATCCGCGACGCCCTCGGCGACATGGAAGCGGCGATCCAGCAGGTCGCC
GGAGACGCCAGCCAGACCGCCGACGCCAGTCGCAGCGCAGGCCAGGCAGTGGAGCACGGCCAGCGGGTGATC
GGCGAGAGCCTGGGCGGCCTGCGCGAGCTGGTCGACGAGGTGCAGGGCAACGCCCAGTCGATCGAGCGCCTG
GCCGAGGAGTCGGCGACCATCGGCAGCGTGCTGACGGTGATCCGCTCGATCGCCGAACAGACCAACCTGCTC
GCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGACCAGGGCCGCGGCTTCGCCGTGGTCGCCGAGGAA
GTCCGCTCGCTGGCCCAGCGCACCGCCGGCGCCACCGAGGAGATCCAGCAGCTCATCGGCCGCCTGCAACAG
GCCGCGCGGCAATCGGTGGAGGCCATGCGCAGCCAGGTCGAGCATGCCGAACGCACCGCCGAACAGGCCGGC
GCGGCGGAGGGCGCGCTGGACGAAGTGGTCGCCGCGATCCATACCATCGGCGTGATGGCCGAACGCATCGCC
GAAGGCTCGACCCAGCAGAGCCAGGCGGTCGGCGAGATTCGCTCGCACAGCGAACGCATCCACGCCCTGGGC
GGGGAAAACCTGCGGCTGATCGGCCATAGCCGCGAACAGGGCGAGCAACTGCGGCAACTGGGCGGCGACCTG
CGCACCACGGTGCAGGCCTTCCGCCTGTGA
Translation:
MRLKQLTNLNTLLLLTVCLALGITLWWSQRAMERPFQLLDQYLELSQRFDEQVARNVRQYLGSGDAVRQQAA
LQALESLAEALPELPPDLARTLAPSLAELREFSAGDLLAAGKLAGDPQGLLLQAERDLAGNLEQWSAYLDAA
TEQPQAGAYRTPLLLASLHLTRLSLARAKLVESANPALAGDVERELANLREQAGRIEALPLLGVLEEQRSAS
DDFAAMMGLAGDAEAGAGNAEDRGVALRRELASLLQRYPDELRRTRDLIERRQQLSADTGARLDAVRQALAT
LEPQVRGERQRLQSQVRLIQGGMIALILLIALAIDSLQRRLARVLGQLVPALSAWADGDFSRPISLRTRTED
LRNLEDSLNRLRSFLAELVGAIHRRAEQVAGSSQTLAEVSSGLHAGVERQAGDTGQIRDALGDMEAAIQQVA
GDASQTADASRSAGQAVEHGQRVIGESLGGLRELVDEVQGNAQSIERLAEESATIGSVLTVIRSIAEQTNLL
ALNAAIEAARAGDQGRGFAVVAEEVRSLAQRTAGATEEIQQLIGRLQQAARQSVEAMRSQVEHAERTAEQAG
AAEGALDEVVAAIHTIGVMAERIAEGSTQQSQAVGEIRSHSERIHALGGENLRLIGHSREQGEQLRQLGGDL
RTTVQAFRL*
AnnotationID:467GeneID:458
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:38
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:ctpL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative methyl-accepting chemotaxis transducer for inorganic phosphate
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66189.1|AE016246_6 (AE016776) methyl-accepting chemotaxis transducer for inorganic
           phosphate CtpL [Pseudomonas putida KT2440]
          Length = 653

 Score =  786 bits (2029), Expect = 0.0
 Identities = 426/657 (64%), Positives = 507/657 (77%), Gaps = 4/657 (0%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  91.7% aligned
Score =  180 bits (457), Expect = 4e-46
Identities = 108/378 (28%), Positives = 194/378 (51%), Gaps = 4/378 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer). 
CD-Length = 262 residues, 100.0% aligned
Score =  162 bits (410), Expect = 1e-40
Identities = 86/262 (32%), Positives = 148/262 (56%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain. 
CD-Length = 251 residues,  99.6% aligned
Score =  149 bits (377), Expect = 1e-36
Identities = 94/250 (37%), Positives = 140/250 (56%)







   
Genomic Context:






   
Comment:


















    ReferenceID:919




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18061




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35202




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:458_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:458
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
782
                           PA4844_tr
                           translation of PA4844
                           657
                           99.08
                           99.39
                           0
                           3159.0
     

     
     
33948
                           gb|AAG08229.1|AE004897_7
                           (AE004897) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           657
                           99.08
                           99.39
                           0
                           3159.0
     

     
     
33949
                           dbj|BAA96489.1|
                           (AB039333) chemotactic transducer CtpL [Pseudomonas aeruginosa]
                           704
                           75.28
                           77.27
                           119
                           2487.0
     

     
     
33950
                           gb|AAN66189.1|AE016246_6
                           (AE016776) methyl-accepting chemotaxis transducer for inorganic phosphate CtpL [Pseudomonas putida KT2440]
                           658
                           64.89
                           77.20
                           6
                           2034.0
     

     
     
33951
                           gb|AAG04950.1|AE004584_6
                           (AE004584) aerotaxis receptor Aer [Pseudomonas aeruginosa PAO1]
                           692
                           25.28
                           39.01
                           206
                           480.0
     

     






      

          
GC ORFID: 43460How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4844Glimmer Score: 

          
Start: 4972117Stop: 4974090

          
Length: 1974


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4844 translation of PA4844Homolog Bit Score 1221.0

          
Other Homologs:  t_PA1561 (ORF: BLASTX 183.0), t_PA4844 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTCAAGCAACTCACCAATCTCAACACCCTGCTCCTGCTCACCGTCTGCCTCGCCCTGGGAATCACC 
CTGTGGTGGTCGCAACGCGCCATGGAGCGCCCGTTCCAGTTGCTCGACCAGTACCTGGAGCTGTCGCAGCGC 
TTCGACGAACAGGTCGCGCGCAACGTCCGCCAGTACCTCGGCAGCGGCGACGCCGTACGCCAGCAGGCCGCG 
CTGCAGGCCCTGGAAAGCCTCGCCGAGGCCTTGCCGGAGCTACCGCCGGACCTCGCCCGGACCCTCGCGCCA 
AGCCTCGCGGAGTTGCGCGAATTCAGCGCCGGCGACCTGCTCGCCGCCGGCAAGCTCGCCGGCGACCCGCAG 
GGCCTGCTGCTACAGGCCGAGCGCGACCTCGCCGGCAACCTGGAACAATGGTCCGCCTACCTGGACGCCGCG 
ACGGAGCAGCCCCAGGCCGGCGCCTACCGCACCCCGCTGCTGCTCGCCAGCCTGCACCTGACCCGCCTCAGC 
CTGGCCCGCGCCAAGCTGGTGGAAAGCGCCAACCCGGCCCTGGCCGGCGACGTCGAGCGCGAACTGGCCAAC 
CTGCGCGAGCAGGCCGGGCGGATCGAGGCCTTGCCGTTGCTCGGCGTGCTCGAGGAGCAACGCTCGGCCAGC 
GACGACTTCGCCGCCATGATGGGGCTGGCCGGCGACGCCGAGGCTGGCGCCGGCAATGCCGAAGACCGCGGC 
GTGGCGCTGCGGCGCGAACTCGCCAGCCTGCTGCAACGCTATCCGGACGAGTTGCGCCGCACCCGCGACCTG 
ATCGAGCGTCGCCAGCAACTGTCCGCCGACACCGGCGCCAGACTGGACGCGGTGCGCCAGGCCCTGGCCACC 
CTGGAGCCGCAGGTGCGCGGCGAGCGCCAGCGCCTGCAAAGCCAGGTACGCCTGATCCAGGGTGGGATGATC 
GCCCTGATCCTGCTCATCGCCCTCGCCATCGACAGCCTGCAAAGGCGCCTGGCACGGGTCCTCGGGCAACTG 
GTGCCGGCGCTCTCGGCCTGGGCCGACGGCGACTTCTCACGCCCCATATCCCTGCGTACCCGCACCGAGGAC 
CTGCGCAACCTGGAAGATTCGCTGAACCGCCTGCGCAGCTTCCTCGCCGAGCTGGTCGGCGCGATCCACCGC 
CGCGCCGAACAGGTCGCCGGCAGCAGCCAGACCCTGGCCGAGGTCAGCAGCGGCCTGCATGCCGGGGTCGAG 
CGCCAGGCCGGCGATACCGGGCAGATCCGCGACGCCCTCGGCGACATGGAAGCGGCGATCCAGCAGGTCGCC 
GGAGACGCCAGCCAGACCGCCGACGCCAGTCGCAGCGCAGGCCAGGCAGTGGAGCACGGCCAGCGGGTGATC 
GGCGAGAGCCTGGGCGGCCTGCGCGAGCTGGTCGACGAGGTGCAGGGCAACGCCCAGTCGATCGAGCGCCTG 
GCCGAGGAGTCGGCGACCATCGGCAGCGTGCTGACGGTGATCCGCTCGATCGCCGAACAGACCAACCTGCTC 
GCCCTCAATGCCGCCATCGAGGCCGCCCGCGCCGGCGACCAGGGCCGCGGCTTCGCCGTGGTCGCCGAGGAA 
GTCCGCTCGCTGGCCCAGCGCACCGCCGGCGCCACCGAGGAGATCCAGCAGCTCATCGGCCGCCTGCAACAG 
GCCGCGCGGCAATCGGTGGAGGCCATGCGCAGCCAGGTCGAGCATGCCGAACGCACCGCCGAACAGGCCGGC 
GCGGCGGAGGGCGCGCTGGACGAAGTGGTCGCCGCGATCCATACCATCGGCGTGATGGCCGAACGCATCGCC 
GAAGGCTCGACCCAGCAGAGCCAGGCGGTCGGCGAGATTCGCTCGCACAGCGAACGCATCCACGCCCTGGGC 
GGGGAAAACCTGCGGCTGATCGGCCATAGCCGCGAACAGGGCGAGCAACTGCGGCAACTGGGCGGCGACCTG 
CGCACCACGGTGCAGGCCTTCCGCCTGTGA