ViewGene
Locus Name:
GeneID:
Location:

GeneID:4578
TrivialName: PA14_12640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12640
PAO1 Ortholog Locus:PA3960
Sequence Length:408
Protein Length:135
Start: 1085629
Stop: 1085222
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07347.1|AE004814_2 (AE004814) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 135/135 (100%), Positives = 135/135 (100%)
Sequence:
ATGCATACCGCCATCCCCTGCTGCACGATCAACGGCGAACAGCCCGCCCTGCGCGGACAGGTCTGCCAGTCG
CTGCTGATCCAGGAATGGTGGTGGGAAGGCCGTCCGGCCGATCCGGTGAACGTGGTCTACCTGCAGTTCGAG
CAACGCTGGTATCGCCTCTACTTCGAGGGCGAGACGGTGTTCTGGCGCAGCGGCGAAGCGCCGCGGCCCTGC
GAGAACGACGAAGGCCCGGGCGAGTACCGCCTGCACGACCTCGGCCGGCAGCGCGGCCTGGTCGGTGTGCGC
CTGCTGGCCCTGGAGTTCGTCCTCAACGGCCCGACCCTGGACAGCCACTTCGACTTCGCCGACGGCCAGCGC
CTGAGTTTCCGGCACTTCCTCGACGACGACCTGACCCGGGTGCTCTGA
Translation:
MHTAIPCCTINGEQPALRGQVCQSLLIQEWWWEGRPADPVNVVYLQFEQRWYRLYFEGETVFWRSGEAPRPC
ENDEGPGEYRLHDLGRQRGLVGVRLLALEFVLNGPTLDSHFDFADGQRLSFRHFLDDDLTRVL*
AnnotationID:4584GeneID:4578
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 17:05:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3960
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9157




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26299




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4578
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6944
                           PA3960_tr
                           translation of PA3960
                           135
                           99.99
                           99.99
                           0
                           751.0
     

     
     
184854
                           gb|AAG07347.1|AE004814_2
                           (AE004814) hypothetical protein PA3960 [Pseudomonas aeruginosa PAO1]
                           135
                           99.99
                           99.99
                           0
                           751.0
     

     






      

          
GC ORFID: 47580How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3960Glimmer Score: 

          
Start: 3868309Stop: 3868716

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3960 translation of PA3960Homolog Bit Score 293.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCATACCGCCATCCCCTGCTGCACGATCAACGGCGAACAGCCCGCCCTGCGCGGACAGGTCTGCCAGTCG 
CTGCTGATCCAGGAATGGTGGTGGGAAGGCCGTCCGGCCGATCCGGTGAACGTGGTCTACCTGCAGTTCGAG 
CAACGCTGGTATCGCCTCTACTTCGAGGGCGAGACGGTGTTCTGGCGCAGCGGCGAAGCGCCGCGGCCCTGC 
GAGAACGACGAAGGCCCGGGCGAGTACCGCCTGCACGACCTCGGCCGGCAGCGCGGCCTGGTCGGTGTGCGC 
CTGCTGGCCCTGGAGTTCGTCCTCAACGGCCCGACCCTGGACAGCCACTTCGACTTCGCCGACGGCCAGCGC 
CTGAGTTTCCGGCACTTCCTCGACGACGACCTGACCCGGGTGCTCTGA