ViewGene
Locus Name:
GeneID:
Location:

GeneID:4577
TrivialName: PA14_27450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27450
PAO1 Ortholog Locus:PA2833
Sequence Length:447
Protein Length:148
Start: 2383065
Stop: 2383511
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06221.1|AE004710_3 (AE004710) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 147/148 (99%), Positives = 147/148 (99%)
Sequence:
ATGTTCCATACACTCCTGGTCGCCATCGACGGCGGCCCGCAGACCCGTCGCATTGCCGAGCTGGCGCGGCAG
GCCGCCGCGCCGGGCGCGAGGGTCCACCTGCTGTGCGCGGTGGACGCCGGCTATGCGTTGCCGGGCCGGCCG
ACGCTGCTCGACTATCCGCCCGCCGCGCACGAGTGTGAAGAGGCCCGGCAGGTGCTCGACGAGGCCCGTGCG
CTGCTAGCCGGGTGCGAGCTGGAGGTACGGGCCGAGCTACGCGCCGGCGACCCGGTGCAGGTGATCCTGGGC
GAGGCGCGGCGCCTGGGCTGTGAGCTGATCGTCATCGGCCATCGGCACCTGGGACGGCTGGAGCGCCTGCTC
GATCCTTCAGTTGGCGACCGGGTGATCCGCGAGGCGCCGTGTCCGGTGCTGGTGGAAGTGCGCGAGGAAGAT
GCGCAGGGGAGTTGA
Translation:
MFHTLLVAIDGGPQTRRIAELARQAAAPGARVHLLCAVDAGYALPGRPTLLDYPPAAHECEEARQVLDEARA
LLAGCELEVRAELRAGDPVQVILGEARRLGCELIVIGHRHLGRLERLLDPSVGDRVIREAPCPVLVEVREED
AQGS*
AnnotationID:4583GeneID:4577
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 08:08:39
Gene Name:
Confidence Code:3
GeneProduct:putative universal stress protein
Cell Localization:(1) Cytoplasmic
Synonyms:PA2833
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00582,COG0589
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66893.1|AE016317_10 (AE016778) universal stress protein family [Pseudomonas putida
           KT2440]
          Length = 148

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 7/141 (4%)






 
Structural Features:
pfam00582, Usp, Universal stress protein family.
CD-Length = 139 residues,  98.6% aligned
Score = 76.0 bits (186), Expect = 2e-15
Identities = 48/139 (34%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins 
[Signal transduction mechanisms]
CD-Length = 154 residues,  94.8% aligned
Score = 65.8 bits (159), Expect = 2e-12
Identities = 54/152 (35%), Positives = 71/152 (46%), Gaps = 9/152 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9155




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26297




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36186




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4577_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4577
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6943
                           PA2833_tr
                           translation of PA2833
                           148
                           99.32
                           99.32
                           0
                           751.0
     

     
     
184853
                           gb|AAG06221.1|AE004710_3
                           (AE004710) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           148
                           99.32
                           99.32
                           0
                           751.0
     

     






      

          
GC ORFID: 47579How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2833Glimmer Score: 

          
Start: 2570862Stop: 2570416

          
Length: 447


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2833 translation of PA2833Homolog Bit Score 293.0

          
Other Homologs:  t_PA2833 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCATACACTCCTGGTCGCCATCGACGGCGGCCCGCAGACCCGTCGCATTGCCGAGCTGGCGCGGCAG 
GCCGCCGCGCCGGGCGCGAGGGTCCACCTGCTGTGCGCGGTGGACGCCGGCTATGCGTTGCCGGGCCGGCCG 
ACGCTGCTCGACTATCCGCCCGCCGCGCACGAGTGTGAAGAGGCCCGGCAGGTGCTCGACGAGGCCCGTGCG 
CTGCTAGCCGGGTGCGAGCTGGAGGTACGGGCCGAGCTACGCGCCGGCGACCCGGTGCAGGTGATCCTGGGC 
GAGGCGCGGCGCCTGGGCTGTGAGCTGATCGTCATCGGCCATCGGCACCTGGGACGGCTGGAGCGCCTGCTC 
GATCCTTCAGTTGGCGACCGGGTGATCCGCGAGGCGCCGTGTCCGGTGCTGGTGGAAGTGCGCGAGGAAGAT 
GCGCAGGGGAGTTGA