ViewGene
Locus Name:
GeneID:
Location:

GeneID:4576
TrivialName: PA14_27120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27120
PAO1 Ortholog Locus:PA2860
Sequence Length:441
Protein Length:146
Start: 2355899
Stop: 2356339
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06248.1|AE004712_8 (AE004712) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/146 (98%), Positives = 144/146 (98%)
Sequence:
GTGCGCCGATTTAAACAGCAACTTGCGGGGCGCCCGGCAGCAGCCGAAATACCGCTAAAGCGCTGGCTCGGT
GTTGCCTCTCACCGCTGTCCAGCGGGACCGAAGAGGCGGAGACATGACGTCATGACCTGTCCCAGCACGCAA
TTGCGCCTGGCACCCATCACCACCGGCCTGGTCCGGCGGAACCCGAGGATTCTCCTCAGCGGGCCGCACCAG
CCGACCCTCGTCCGTTACCTCGAAGGCTGGCCGAAGCGCTGGAACGGTTCGCGTACCTTCCTTATCCAGTTC
GCCCAGGACGGCAAGGACCTGGCGCGCTTCCCCAGCGACGCGTTCGACTTCGCCGTGGTCCAGACCCCCGGG
GCGGAAGACCTGGATCTGGTGGTCCGGCAACTGATCCGGGTCGCCCGCCAGGGCCTGATCACCCGCCGTATC
CTGCGCTGA
Translation:
MRRFKQQLAGRPAAAEIPLKRWLGVASHRCPAGPKRRRHDVMTCPSTQLRLAPITTGLVRRNPRILLSGPHQ
PTLVRYLEGWPKRWNGSRTFLIQFAQDGKDLARFPSDAFDFAVVQTPGAEDLDLVVRQLIRVARQGLITRRI
LR*
AnnotationID:4582GeneID:4576
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2860
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15128




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26295




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4576
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6942
                           PA2860_tr
                           translation of PA2860
                           146
                           98.63
                           98.63
                           0
                           751.0
     

     
     
184851
                           gb|AAG06248.1|AE004712_8
                           (AE004712) hypothetical protein PA2860 [Pseudomonas aeruginosa PAO1]
                           146
                           97.94
                           98.63
                           0
                           748.0
     

     
     
184852
                           gb|AAN67927.1|AE016425_4
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           146
                           34.93
                           46.57
                           44
                           258.0
     

     






      

          
GC ORFID: 47578How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2860Glimmer Score: 

          
Start: 2598027Stop: 2597587

          
Length: 441


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2860 translation of PA2860Homolog Bit Score 293.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1047 (ORF: BLASTX 120.0), t_PA2860 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGCCGATTTAAACAGCAACTTGCGGGGCGCCCGGCAGCAGCCGAAATACCGCTAAAGCGCTGGCTCGGT 
GTTGCCTCTCACCGCTGTCCAGCGGGACCGAAGAGGCGGAGACATGACGTCATGACCTGTCCCAGCACGCAA 
TTGCGCCTGGCACCCATCACCACCGGCCTGGTCCGGCGGAACCCGAGGATTCTCCTCAGCGGGCCGCACCAG 
CCGACCCTCGTCCGTTACCTCGAAGGCTGGCCGAAGCGCTGGAACGGTTCGCGTACCTTCCTTATCCAGTTC 
GCCCAGGACGGCAAGGACCTGGCGCGCTTCCCCAGCGACGCGTTCGACTTCGCCGTGGTCCAGACCCCCGGG 
GCGGAAGACCTGGATCTGGTGGTCCGGCAACTGATCCGGGTCGCCCGCCAGGGCCTGATCACCCGCCGTATC 
CTGCGCTGA