ViewGene

Locus Name:
GeneID:
Location:

GeneID:4575
TrivialName: PA14_29510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29510
PAO1 Ortholog Locus:PA2675
Sequence Length:435
Protein Length:144
Start: 2560163
Stop: 2560597
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06063.1|AE004695_16 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 143/144 (99%), Positives = 144/144 (100%)
Sequence:
ATGAACAGAGCTGCACAACAGGGCTTCACCCTGCTCGAGATGATTGTGGTGTTGGTGATTATCGGCATGCTG
ATGGGGCTCGTCGGGCCGCGACTGTTCAGTCAGGCCGACAAGGCGAAGGCGCAGACGGCGGATACCCAGGTG
AAGATGCTCAAGGGCGCGTTGCTCACCATGCGCCTGGACATCGGCCGGCTGCCGACCGAAGAAGAAGGCCTG
GCGCTACTCAACACGCCGCCTTCCGATGAACGTCTCGGGGCCTTCTGGCACGGGCCCTACCTCGAGGGCGGC
GTACCGCTGGACCCCTGGAACCGGCCTTACCTGTACAGCGACAGGCCGAGTGCCGAACAACCCTTCACTCTC
TACAGCCAGGGCGCGGATGGGCAGCCCGGTGGGAAAGGCCTGGATGCCGATGTCGGTTACGCGCCCAAACGT
TGA
Translation:
MNRAAQQGFTLLEMIVVLVIIGMLMGLVGPRLFSQADKAKAQTADTQVKMLKGALLTMRLDIGRLPTEEEGL
ALLNTPPSDERLGAFWHGPYLEGGVPLDPWNRPYLYSDRPSAEQPFTLYSQGADGQPGGKGLDADVGYAPKR
*
AnnotationID:4581GeneID:4575
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative type II secretion system protein
Cell Localization:()
Synonyms:hplT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2165
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD85522.1| (BX321861) Bacterial general secretion pathway protein G
           [Nitrosomonas europaea ATCC 19718]
          Length = 166

 Score =  132 bits (332), Expect = 6e-31
 Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 4/133 (3%)

>gb|AAN69025.1|AE016534_8 (AE016786) type II secretion pathway protein XcpT [Pseudomonas
           putida KT2440]
          Length = 169

 Score =  125 bits (314), Expect = 7e-29
 Identities = 63/133 (47%), Positives = 85/133 (63%), Gaps = 3/133 (2%)
Structural Features:
COG2165, PulG, Type II secretory pathway, pseudopilin PulG 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 149 residues,  98.0% aligned
Score = 86.6 bits (213), Expect = 9e-19
Identities = 57/146 (39%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Genomic Context:
Comment:
ReferenceID:9151
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26293
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36346
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4575_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4575

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6940 PA2675_tr translation of PA2675 144 99.30 99.99 0 750.0
184835 gb|AAG06063.1|AE004695_16 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1] 144 99.30 99.99 0 750.0
184839 gb|AAC17881.3| (AF062532) secretion protein XcmT1 [Pseudomonas putida GB-1] 146 43.15 58.90 7 302.0
184838 emb|CAD16017.1| (AL646069) PUTATIVE GSPG-RELATED TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 163 42.33 53.37 27 308.0
184841 dbj|BAC51284.1| (AP005957) bll6019 [Bradyrhizobium japonicum USDA 110] 156 41.66 55.76 18 300.0
GC ORFID: 47577How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2675Glimmer Score:
Start: 2393763Stop: 2393329
Length: 435
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2675 translation of PA2675Homolog Bit Score 293.0
Other Homologs: t_PA2675 (ORF: GLIMMER)
GC ORF Sequence
ATGAACAGAGCTGCACAACAGGGCTTCACCCTGCTCGAGATGATTGTGGTGTTGGTGATTATCGGCATGCTG
ATGGGGCTCGTCGGGCCGCGACTGTTCAGTCAGGCCGACAAGGCGAAGGCGCAGACGGCGGATACCCAGGTG
AAGATGCTCAAGGGCGCGTTGCTCACCATGCGCCTGGACATCGGCCGGCTGCCGACCGAAGAAGAAGGCCTG
GCGCTACTCAACACGCCGCCTTCCGATGAACGTCTCGGGGCCTTCTGGCACGGGCCCTACCTCGAGGGCGGC
GTACCGCTGGACCCCTGGAACCGGCCTTACCTGTACAGCGACAGGCCGAGTGCCGAACAACCCTTCACTCTC
TACAGCCAGGGCGCGGATGGGCAGCCCGGTGGGAAAGGCCTGGATGCCGATGTCGGTTACGCGCCCAAACGT
TGA