ViewGene
Locus Name:
GeneID:
Location:

GeneID:4574
TrivialName: PA14_36530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36530
PAO1 Ortholog Locus:PA2169
Sequence Length:453
Protein Length:150
Start: 3250449
Stop: 3249997
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05557.1|AE004644_4 (AE004644) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 147/150 (98%), Positives = 147/150 (98%)
Sequence:
ATGAACCAGACCAACCTCGACGACACCCTCGACGTACTCAACGACCTGCTGCAAACCAGCAAGGATGGCGAG
GCCGGCTTCCAGGCCTGCGCCGAAGACCTGCGCGATCCGCAGTTGAAGGCGGCGATGCTGGAGCAGAGCCGC
GACTGCGCCGCGGCTGCCGACGAGCTGGAGCGGATCGTCCTGGAACTGGGTGGCAAACCCAAGGACAGCACC
AGTTTCGCCGGTGACCTGCATCGGCGCTGGGTCGACCTGAAGTCACTGGTCACCGGCAAGGACGAAGAGGCG
GTGCTCAACGAATGCGAGCGCGGCGAGGATGTCGCCAAGCAGCGTTACCAGGCGGCGCTGGAAAAACCGCTG
CCGGCGGAGATCCACCAGGTGATCGAGCGCCAGTACCAGGGCGTGCTCCGTCACCACGACCGGGTCCGCGCC
CTGCGCGACGCCCGCGCCTGA
Translation:
MNQTNLDDTLDVLNDLLQTSKDGEAGFQACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKPKDST
SFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKQRYQAALEKPLPAEIHQVIERQYQGVLRHHDRVRA
LRDARA*
AnnotationID:4580GeneID:4574
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2169
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9149




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4574
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6939
                           PA2169_tr
                           translation of PA2169
                           150
                           98.00
                           98.00
                           0
                           750.0
     

     
     
184832
                           gb|AAG05557.1|AE004644_4
                           (AE004644) hypothetical protein PA2169 [Pseudomonas aeruginosa PAO1]
                           150
                           98.00
                           98.00
                           0
                           750.0
     

     
     
184834
                           gb|AAO54828.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           158
                           50.00
                           66.45
                           10
                           362.0
     

     
     
184833
                           gb|AAN66422.1|AE016269_9
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           180
                           46.66
                           63.88
                           31
                           401.0
     

     






      

          
GC ORFID: 47576How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2169Glimmer Score: 

          
Start: 1703466Stop: 1703918

          
Length: 453


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2169 translation of PA2169Homolog Bit Score 293.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4427 (ORF: BLASTX 145.0)

          
GC ORF Sequence

           
ATGAACCAGACCAACCTCGACGACACCCTCGACGTACTCAACGACCTGCTGCAAACCAGCAAGGATGGCGAG 
GCCGGCTTCCAGGCCTGCGCCGAAGACCTGCGCGATCCGCAGTTGAAGGCGGCGATGCTGGAGCAGAGCCGC 
GACTGCGCCGCGGCTGCCGACGAGCTGGAGCGGATCGTCCTGGAACTGGGTGGCAAACCCAAGGACAGCACC 
AGTTTCGCCGGTGACCTGCATCGGCGCTGGGTCGACCTGAAGTCACTGGTCACCGGCAAGGACGAAGAGGCG 
GTGCTCAACGAATGCGAGCGCGGCGAGGATGTCGCCAAGCAGCGTTACCAGGCGGCGCTGGAAAAACCGCTG 
CCGGCGGAGATCCACCAGGTGATCGAGCGCCAGTACCAGGGCGTGCTCCGTCACCACGACCGGGTCCGCGCC 
CTGCGCGACGCCCGCGCCTGA