ViewGene
Locus Name:
GeneID:
Location:

GeneID:4572
TrivialName: PA14_44480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44480
PAO1 Ortholog Locus:PA1545
Sequence Length:468
Protein Length:155
Start: 3961473
Stop: 3961006
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04934.1|AE004582_12 (AE004582) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 153/155 (98%), Positives = 155/155 (100%)
Sequence:
ATGTTGACCCTCAGTGGCTGGATCACCACCCAGGTGCCGCCCTCGTCGCGCGCCGCCGCGGATGCCAAGGCC
GCGCGGACCGGCACCGCCGAGCAGGCGGAAGACCCGGCCGCCGGTACCGACGCCGCCGATCAGCATGTACGG
CTTTCCCAGGCAGGGCGCGAGCTGGCCGCCACCATGGGGGTGCCGGTGGAGGAGGAGGACGAGGATATCCCG
CAGGAGTTGCGGCCGATGGTGAAGATGATCCGCGAGTTGAAGAAGAAGATCGAAGAGAAGCTCAGGGAGCTG
CAGGAGGCCATGAGGTCGTCCGATCCGGGGGCGAAGGAGGCTCGCGTGCCTGAGTTGCAGAAGGAGTTGCAA
CAACTCAACTCCGCCCTGCAGACGGCAACGGCAGCGATGGCATCGGCCATCAAGGAGATGGGTATCAGCGAC
CCGGCGCTGATCATGAGGGTCATGGGCAGCCGGTAG
Translation:
MLTLSGWITTQVPPSSRAAADAKAARTGTAEQAEDPAAGTDAADQHVRLSQAGRELAATMGVPVEEEDEDIP
QELRPMVKMIRELKKKIEEKLRELQEAMRSSDPGAKEARVPELQKELQQLNSALQTATAAMASAIKEMGISD
PALIMRVMGSR*
AnnotationID:4578GeneID:4572
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 09:09:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9145




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26287




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4572
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6937
                           PA1545_tr
                           translation of PA1545
                           155
                           98.70
                           99.99
                           0
                           750.0
     

     
     
184820
                           gb|AAG04934.1|AE004582_12
                           (AE004582) hypothetical protein PA1545 [Pseudomonas aeruginosa PAO1]
                           155
                           98.70
                           99.99
                           0
                           750.0
     

     
     
184821
                           emb|CAA66618.1|
                           (X97981) hypothetical protein [Pseudomonas aeruginosa]
                           155
                           98.70
                           99.99
                           0
                           750.0
     

     
     
184822
                           emb|CAA40905.1|
                           (X57736) unnamed protein product [Pseudomonas aeruginosa]
                           155
                           98.70
                           99.99
                           0
                           750.0
     

     
     
184823
                           gb|AAA25712.1|
                           (M98276) ORF X; putative [Pseudomonas aeruginosa]
                           155
                           98.70
                           99.99
                           0
                           750.0
     

     






      

          
GC ORFID: 47574How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1545Glimmer Score: 

          
Start: 992436Stop: 992903

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1545 translation of PA1545Homolog Bit Score 293.0

          
Other Homologs:  t_PA1545 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGACCCTCAGTGGCTGGATCACCACCCAGGTGCCGCCCTCGTCGCGCGCCGCCGCGGATGCCAAGGCC 
GCGCGGACCGGCACCGCCGAGCAGGCGGAAGACCCGGCCGCCGGTACCGACGCCGCCGATCAGCATGTACGG 
CTTTCCCAGGCAGGGCGCGAGCTGGCCGCCACCATGGGGGTGCCGGTGGAGGAGGAGGACGAGGATATCCCG 
CAGGAGTTGCGGCCGATGGTGAAGATGATCCGCGAGTTGAAGAAGAAGATCGAAGAGAAGCTCAGGGAGCTG 
CAGGAGGCCATGAGGTCGTCCGATCCGGGGGCGAAGGAGGCTCGCGTGCCTGAGTTGCAGAAGGAGTTGCAA 
CAACTCAACTCCGCCCTGCAGACGGCAACGGCAGCGATGGCATCGGCCATCAAGGAGATGGGTATCAGCGAC 
CCGGCGCTGATCATGAGGGTCATGGGCAGCCGGTAG