ViewGene
Locus Name:
GeneID:
Location:

GeneID:4571
TrivialName: PA14_46780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46780
PAO1 Ortholog Locus:PA1353
Sequence Length:414
Protein Length:137
Start: 4166742
Stop: 4167155
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04742.1|AE004565_1 (AE004565) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/137 (100%), Positives = 137/137 (100%)
Sequence:
ATGCAAATCGTCCCCTACCTGATCTTCAACGGTAATTGCCGGGAGGCCTTCAGCTGCTACCACCAGCACCTG
GGCGGCACCCTGGAGGCCATGCTGCCGTTCGGCGACAGCCCCGAGTGCGGCGACATCCCGGCCGACTGGAAA
GACAAGATCATGCACGCACGGCTGGTGGTCGGCAGCTTCGCCCTGATGGCCTCGGACAATCACCCGGCCTAT
CCCTACGAAGGCATCAAGGGCTGTTCCATCAGCCTCAACGTCGACAGCAAGGCCGAGGCCGAGCGCCTGTTC
AACGCCCTCGCCGAGGGCGGCTCGGTCCAGATGCCGCTGGGCCCGACCTTCTGGGCGGCGAGCTTCGGCATG
TTCACCGACCGCTTCGGCGTGGCCTGGATGGTCAACTGCGAGCAGGACCGGTAG
Translation:
MQIVPYLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPECGDIPADWKDKIMHARLVVGSFALMASDNHPAY
PYEGIKGCSISLNVDSKAEAERLFNALAEGGSVQMPLGPTFWAASFGMFTDRFGVAWMVNCEQDR*
AnnotationID:4577GeneID:4571
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1353
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9143




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26285




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37438




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4571_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4571
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6936
                           PA1353_tr
                           translation of PA1353
                           137
                           99.99
                           99.99
                           0
                           749.0
     

     
     
184810
                           gb|AAG04742.1|AE004565_1
                           (AE004565) hypothetical protein PA1353 [Pseudomonas aeruginosa PAO1]
                           137
                           99.99
                           99.99
                           0
                           749.0
     

     
     
184811
                           gb|AAL02404.1|
                           (AY044272) unknown [Pseudomonas sp. B13]
                           137
                           60.58
                           72.99
                           0
                           438.0
     

     
     
184812
                           emb|CAE32906.1|
                           (BX640444) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           141
                           47.51
                           65.95
                           6
                           324.0
     

     
     
184813
                           emb|CAE36648.1|
                           (BX640427) conserved hypothetical protein [Bordetella parapertussis]
                           141
                           47.51
                           65.95
                           6
                           324.0
     

     






      

          
GC ORFID: 47573How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1353Glimmer Score: 

          
Start: 787167Stop: 786754

          
Length: 414


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1353 translation of PA1353Homolog Bit Score 293.0

          
Other Homologs:  t_PA4641 (ORF: BLASTX 117.0), t_PA1353 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAATCGTCCCCTACCTGATCTTCAACGGTAATTGCCGGGAGGCCTTCAGCTGCTACCACCAGCACCTG 
GGCGGCACCCTGGAGGCCATGCTGCCGTTCGGCGACAGCCCCGAGTGCGGCGACATCCCGGCCGACTGGAAA 
GACAAGATCATGCACGCACGGCTGGTGGTCGGCAGCTTCGCCCTGATGGCCTCGGACAATCACCCGGCCTAT 
CCCTACGAAGGCATCAAGGGCTGTTCCATCAGCCTCAACGTCGACAGCAAGGCCGAGGCCGAGCGCCTGTTC 
AACGCCCTCGCCGAGGGCGGCTCGGTCCAGATGCCGCTGGGCCCGACCTTCTGGGCGGCGAGCTTCGGCATG 
TTCACCGACCGCTTCGGCGTGGCCTGGATGGTCAACTGCGAGCAGGACCGGTAG