ViewGene
Locus Name:
GeneID:
Location:

GeneID:4570
TrivialName: PA14_47340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47340
PAO1 Ortholog Locus:PA1306
Sequence Length:462
Protein Length:153
Start: 4217134
Stop: 4216673
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04695.1|AE004560_3 (AE004560) probable HIT family protein [Pseudomonas aeruginosa PAO1]
Identities = 149/153 (97%), Positives = 149/153 (97%)
Sequence:
ATGTCGGGATTTCCCATGGATTGCGTGTTCTGCGCCATAGCGGGTGGCCGCGAGCCGGCGCACAGACTCTTC
GAGGACGAGCATTTCATCGTCCTGCTGGACATCTTTCCGCTGCGACCGGCGCACGTGCTGATCGTAGCCCGC
GAGCACGCCCCGCACCTGAGCGATCTTTCCGCCGCCGCCCGCGACGCCCTCCCGGCGCTCGCCGAGCGTACC
GGTCGCGCATTGCGCCGGGCCGGTTTCGGCGTGGAAGGCATCAACCTGTTGCTCAACGATGGCGTGGCGGCC
AACCAGCACGTGGCGCACCTGCATCTGCACCTGATTCCCCGGCGTCGCGGCGACCTGCCGCGACTGCTCTGG
CGCGCCCTGACCCGTTTCCTGCCGGTTGGTCGCGCGAGCCTGCAGGCGCGTCTGCAGCGGGAAGGAGAACTA
CTACGTACAGCCTTGCTCAGGGAGGTTTGA
Translation:
MSGFPMDCVFCAIAGGREPAHRLFEDEHFIVLLDIFPLRPAHVLIVAREHAPHLSDLSAAARDALPALAERT
GRALRRAGFGVEGINLLLNDGVAANQHVAHLHLHLIPRRRGDLPRLLWRALTRFLPVGRASLQARLQREGEL
LRTALLREV*
AnnotationID:4576GeneID:4570
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 05:05:13
Gene Name:
Confidence Code:3
GeneProduct:putative Histidine triad (HIT) family protein
Cell Localization:()
Synonyms:PA1306
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01277,pfam01230
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD94154.1| (BX248338) HYPOTHETICAL HIT-LIKE PROTEIN [Mycobacterium bovis
           subsp. bovis AF2122/97]
          Length = 144

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 9/147 (6%)

>gb|AAM04250.1| (AE010743) histidine triad protein [Methanosarcina acetivorans str.
           C2A] [Methanosarcina acetivorans C2A]
          Length = 150

 Score = 89.0 bits (219), Expect = 8e-18
 Identities = 41/108 (37%), Positives = 65/108 (60%), Gaps = 1/108 (0%)

>gb|AAK45559.1| (AE007005) HIT family protein [Mycobacterium tuberculosis CDC1551]
          Length = 156

 Score = 86.7 bits (213), Expect = 4e-17
 Identities = 51/147 (34%), Positives = 76/147 (51%), Gaps = 9/147 (6%)








 
Structural Features:
cd01277, HINT_subgroup, HINT (histidine triad
 nucleotide-binding protein) subgroup
CD-Length = 103 residues, 100.0% aligned
Score =  107 bits (270), Expect = 5e-25

pfam01230, HIT, HIT domain.
CD-Length = 105 residues, 100.0% aligned
Score = 94.9 bits (236), Expect = 4e-21
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 1/106 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9141




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26283




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37493




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4570_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4570
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6935
                           PA1306_tr
                           translation of PA1306
                           153
                           97.38
                           97.38
                           0
                           751.0
     

     
     
184809
                           gb|AAG04695.1|AE004560_3
                           (AE004560) probable HIT family protein [Pseudomonas aeruginosa PAO1]
                           153
                           97.38
                           97.38
                           0
                           751.0
     

     






      

          
GC ORFID: 47572How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1306Glimmer Score: 

          
Start: 736775Stop: 737236

          
Length: 462


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1306 translation of PA1306Homolog Bit Score 293.0

          
Other Homologs:  t_PA1306 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGGGATTTCCCATGGATTGCGTGTTCTGCGCCATAGCGGGTGGCCGCGAGCCGGCGCACAGACTCTTC 
GAGGACGAGCATTTCATCGTCCTGCTGGACATCTTTCCGCTGCGACCGGCGCACGTGCTGATCGTAGCCCGC 
GAGCACGCCCCGCACCTGAGCGATCTTTCCGCCGCCGCCCGCGACGCCCTCCCGGCGCTCGCCGAGCGTACC 
GGTCGCGCATTGCGCCGGGCCGGTTTCGGCGTGGAAGGCATCAACCTGTTGCTCAACGATGGCGTGGCGGCC 
AACCAGCACGTGGCGCACCTGCATCTGCACCTGATTCCCCGGCGTCGCGGCGACCTGCCGCGACTGCTCTGG 
CGCGCCCTGACCCGTTTCCTGCCGGTTGGTCGCGCGAGCCTGCAGGCGCGTCTGCAGCGGGAAGGAGAACTA 
CTACGTACAGCCTTGCTCAGGGAGGTTTGA