ViewGene
Locus Name:
GeneID:
Location:

GeneID:457
TrivialName: PA14_69950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69950
PAO1 Ortholog Locus:PA5299
Sequence Length:1860
Protein Length:619
Start: 6242394
Stop: 6240535
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08684.1|AE004942_7 (AE004942) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 617/619 (99%), Positives = 618/619 (99%)
Sequence:
ATGGGCCTGCCCCTCGGGCTGGGCAAGCCCAACCGACTGGTCAATGCGTTGTACCAGCGCCTGCGGACCCTG
CCGGAGCGCCAACTGACGCTGTATACCGCGCTTTCCCTGGGGCGTCCCGCCGCTGGCGGCGACCTGCAACGG
CGTTTCCTCGAGCCTTTCGCCGAACGGGTCTTCGCCGACTACCCGGAGCTGGATTACCTGCACGCCCTGCGC
CGCGACGAACTGCCGGCGAACATCCGCGTCGAGGAGTTCTACCTGCAGCCCGGCAGCCTGCTGGACAGCGCG
CCGGCGCAGCAGCACTACATCAGTTGCAACTACAGCCACGTCGCCCGCGACATCAATGCCAAGGGCGTCAAC
GCGGTGGCCCAGCTGGTGGCGCGGCATCCCGAGCGGCCGGGCAAGCTGAGCCTGGCCTGCAACCCGGATATC
ACCCTGGACCTCCTGCCGATGCTGGAGAAGCGTCGCGCCGCTGGCGAGACCATCGTCGCCATCGGCGTGGTC
CACGATGACCTGCCCTACCTGCCGGGTGACGCCGAGGTCGAGGAGTCGGTATTCGACCTGCTGATCGACGCG
CCGGCGGAAAGCAGCCGGCTGTTCTCCACGCCGAACATGCCGGTCAACCTGCAGGATCACTGCATCGGTCTC
CACGCCAGCGCGCTGGTGCGCGACGGCGGCACCCTGCAGATCGGCATCGGCTCGATGGGCGACGCGCTGACC
GCCGCCTTGCTGCTGCGCCAGCGCGACAACGCCACCTACCGGGCGTTGATCGACGAGCTGGGGGTGCGTGCG
CGCTGGGCCGAGACGGTCGAGCGCGATGGTGGCCTGGAGCCGTTCCGCCGGGGGCTCTACGGTTGCAGCGAG
ATGTTCGTGCCGGGTCTGCTGGCGCTGGCCGAGGCCGGCGTGCTGAGCCGCCGGGTCTACCCCGACGAAGCG
CGACAGCGTGCTGCCGAGCGCGGCGAGGCGCCGGAGGAGGGCGGGGTGTGGCTGCACGGCGGCTTCTTCCTC
GGTCCGTTGGCGTTCTACCGGCGCCTGCGCGAGATGTCGCTGGAAGAGCGCGCCGGGATCGGCATGACCGGC
ATCGGCTTCGTCAACAACCTGTACCGCCAGGAAGAGCTGAAGCGCCTGCAGCGGCGCGACGCGCGCTTCATC
AACAGCGCCTTCACCGTGACCCTGCTCGGCGCCGGGGTCGCCGACCAGCTGGAGGACGGCCGGGTGCTCAGT
GGCGTCGGCGGGCAGTACAACTTCGTCGCCCAGGCCCACGAGCTGGAGGGCGCACGTTCGATCCTGATGCTG
CGTAGCTGGCGCGAATCCGGCGGGGAAGTCAGTTCGAACATCGTCTGGCAGTACGCCCACACCACCATTCCC
CGGCACTTGCGTGACATGGTGGTGACCGAGTATGGGATCGCCGACCTGCGCGGCAAGAACGACGCGGAAGTG
ATCGCCGCGCTGCTGGCCATCGCCGACTCGCGTTTCCAGCAGGCGCTGGCCGAGCAGGCCCAGTCGGCCGGC
AAGCTGCCGAAGGATTTCGTCCTGCCCGAACGCTATCGCAACAATACCCCGGAGCGCCTGCAGGCCTTGCAC
CAGGCCCACGCAGCGGCGCTGCCGGAGTTTCCCCTGGGCAGCGATTTCGACGAGGTCGAGCAGGACCTGCTG
CGGGCGCTGGGTTGGCTCAAGCGCAAGCTGAAGCTGAGCGAGATTCTCGAACTGGGCAAGGCGACCCTGGAC
GCGCCGGAGCCAGAAGCCTACCCGGCGCATCTGCGGCGCATGGACCTGGACGATCCGCAGGGGCTTCGCGAG
GAACTCTACCAGCGCTTGCTGCTGGCCGGCCTGCGGGCCAGCCAGGAAGAGCGGGGCTGA
Translation:
MGLPLGLGKPNRLVNALYQRLRTLPERQLTLYTALSLGRPAAGGDLQRRFLEPFAERVFADYPELDYLHALR
RDELPANIRVEEFYLQPGSLLDSAPAQQHYISCNYSHVARDINAKGVNAVAQLVARHPERPGKLSLACNPDI
TLDLLPMLEKRRAAGETIVAIGVVHDDLPYLPGDAEVEESVFDLLIDAPAESSRLFSTPNMPVNLQDHCIGL
HASALVRDGGTLQIGIGSMGDALTAALLLRQRDNATYRALIDELGVRARWAETVERDGGLEPFRRGLYGCSE
MFVPGLLALAEAGVLSRRVYPDEARQRAAERGEAPEEGGVWLHGGFFLGPLAFYRRLREMSLEERAGIGMTG
IGFVNNLYRQEELKRLQRRDARFINSAFTVTLLGAGVADQLEDGRVLSGVGGQYNFVAQAHELEGARSILML
RSWRESGGEVSSNIVWQYAHTTIPRHLRDMVVTEYGIADLRGKNDAEVIAALLAIADSRFQQALAEQAQSAG
KLPKDFVLPERYRNNTPERLQALHQAHAAALPEFPLGSDFDEVEQDLLRALGWLKRKLKLSEILELGKATLD
APEPEAYPAHLRRMDLDDPQGLREELYQRLLLAGLRASQEERG*
AnnotationID:466GeneID:457
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 12:12:26
Gene Name:
Confidence Code:3
GeneProduct:putative acetyl-CoA hydrolase/transferase
Cell Localization:()
Synonyms:PA5299
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0427
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70831.1|AE016727_7 (AE016793) acetyl-CoA hydrolase/transferase family protein
           [Pseudomonas putida KT2440]
          Length = 597

 Score =  826 bits (2133), Expect = 0.0
 Identities = 424/615 (68%), Positives = 483/615 (78%), Gaps = 18/615 (2%)








 
Structural Features:
COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]
CD-Length = 501 residues, 100.0% aligned
Score =  416 bits (1071), Expect = 4e-117
Identities = 135/538 (25%), Positives = 191/538 (35%), Gaps = 38/538 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:917




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18059




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34781




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:457_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:457
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
781
                           PA5299_tr
                           translation of PA5299
                           619
                           99.67
                           99.83
                           0
                           3162.0
     

     
     
33943
                           gb|AAG08684.1|AE004942_7
                           (AE004942) hypothetical protein PA5299 [Pseudomonas aeruginosa PAO1]
                           619
                           99.67
                           99.83
                           0
                           3162.0
     

     
     
33945
                           gb|AAN70831.1|AE016727_7
                           (AE016793) acetyl-CoA hydrolase/transferase family protein [Pseudomonas putida KT2440]
                           619
                           68.49
                           78.02
                           22
                           2148.0
     

     
     
33944
                           gb|AAO53661.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           645
                           67.28
                           77.51
                           28
                           2236.0
     

     
     
33947
                           gb|AAM42477.1|
                           (AE012437) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           647
                           47.29
                           60.89
                           50
                           1365.0
     

     






      

          
GC ORFID: 43459How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5299Glimmer Score: 

          
Start: 5506083Stop: 5504224

          
Length: 1860


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5299 translation of PA5299Homolog Bit Score 1222.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3163 (ORF: BLASTX 879.0), t_PA5299 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCCTGCCCCTCGGGCTGGGCAAGCCCAACCGACTGGTCAATGCGTTGTACCAGCGCCTGCGGACCCTG 
CCGGAGCGCCAACTGACGCTGTATACCGCGCTTTCCCTGGGGCGTCCCGCCGCTGGCGGCGACCTGCAACGG 
CGTTTCCTCGAGCCTTTCGCCGAACGGGTCTTCGCCGACTACCCGGAGCTGGATTACCTGCACGCCCTGCGC 
CGCGACGAACTGCCGGCGAACATCCGCGTCGAGGAGTTCTACCTGCAGCCCGGCAGCCTGCTGGACAGCGCG 
CCGGCGCAGCAGCACTACATCAGTTGCAACTACAGCCACGTCGCCCGCGACATCAATGCCAAGGGCGTCAAC 
GCGGTGGCCCAGCTGGTGGCGCGGCATCCCGAGCGGCCGGGCAAGCTGAGCCTGGCCTGCAACCCGGATATC 
ACCCTGGACCTCCTGCCGATGCTGGAGAAGCGTCGCGCCGCTGGCGAGACCATCGTCGCCATCGGCGTGGTC 
CACGATGACCTGCCCTACCTGCCGGGTGACGCCGAGGTCGAGGAGTCGGTATTCGACCTGCTGATCGACGCG 
CCGGCGGAAAGCAGCCGGCTGTTCTCCACGCCGAACATGCCGGTCAACCTGCAGGATCACTGCATCGGTCTC 
CACGCCAGCGCGCTGGTGCGCGACGGCGGCACCCTGCAGATCGGCATCGGCTCGATGGGCGACGCGCTGACC 
GCCGCCTTGCTGCTGCGCCAGCGCGACAACGCCACCTACCGGGCGTTGATCGACGAGCTGGGGGTGCGTGCG 
CGCTGGGCCGAGACGGTCGAGCGCGATGGTGGCCTGGAGCCGTTCCGCCGGGGGCTCTACGGTTGCAGCGAG 
ATGTTCGTGCCGGGTCTGCTGGCGCTGGCCGAGGCCGGCGTGCTGAGCCGCCGGGTCTACCCCGACGAAGCG 
CGACAGCGTGCTGCCGAGCGCGGCGAGGCGCCGGAGGAGGGCGGGGTGTGGCTGCACGGCGGCTTCTTCCTC 
GGTCCGTTGGCGTTCTACCGGCGCCTGCGCGAGATGTCGCTGGAAGAGCGCGCCGGGATCGGCATGACCGGC 
ATCGGCTTCGTCAACAACCTGTACCGCCAGGAAGAGCTGAAGCGCCTGCAGCGGCGCGACGCGCGCTTCATC 
AACAGCGCCTTCACCGTGACCCTGCTCGGCGCCGGGGTCGCCGACCAGCTGGAGGACGGCCGGGTGCTCAGT 
GGCGTCGGCGGGCAGTACAACTTCGTCGCCCAGGCCCACGAGCTGGAGGGCGCACGTTCGATCCTGATGCTG 
CGTAGCTGGCGCGAATCCGGCGGGGAAGTCAGTTCGAACATCGTCTGGCAGTACGCCCACACCACCATTCCC 
CGGCACTTGCGTGACATGGTGGTGACCGAGTATGGGATCGCCGACCTGCGCGGCAAGAACGACGCGGAAGTG 
ATCGCCGCGCTGCTGGCCATCGCCGACTCGCGTTTCCAGCAGGCGCTGGCCGAGCAGGCCCAGTCGGCCGGC 
AAGCTGCCGAAGGATTTCGTCCTGCCCGAACGCTATCGCAACAATACCCCGGAGCGCCTGCAGGCCTTGCAC 
CAGGCCCACGCAGCGGCGCTGCCGGAGTTTCCCCTGGGCAGCGATTTCGACGAGGTCGAGCAGGACCTGCTG 
CGGGCGCTGGGTTGGCTCAAGCGCAAGCTGAAGCTGAGCGAGATTCTCGAACTGGGCAAGGCGACCCTGGAC 
GCGCCGGAGCCAGAAGCCTACCCGGCGCATCTGCGGCGCATGGACCTGGACGATCCGCAGGGGCTTCGCGAG 
GAACTCTACCAGCGCTTGCTGCTGGCCGGCCTGCGGGCCAGCCAGGAAGAGCGGGGCTGA