ViewGene
Locus Name:
GeneID:
Location:

GeneID:4569
TrivialName: PA14_51770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51770
PAO1 Ortholog Locus:PA0968
Sequence Length:447
Protein Length:148
Start: 4598135
Stop: 4597689
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04357.1|AE004530_10 (AE004530) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/148 (100%), Positives = 148/148 (100%)
Sequence:
ATGCGCGCGCAACACGGGGGAAAGCCGTTCCAGCAGCGTTTCCGGGTCTATTACGAGGACACGGATGCCGGC
GGCATCGTCTATTACGTCAACTATCTCAAGTTCATGGAACGGGCTCGGACCGAGCGGCTGCGAGCTTTGGGG
TTCGCCCAATCGCAACTGGTCGGCGACAATCTGCTGTTCGTCGTGCACTCCGCCGAGGCGCGTTACCACGCC
CCGGCCAAGCTCGACGATGAACTGCTTGTCAGCGCCGAGGTCGAGGAGTTGAACCGGGCGAGCCTGAAGTTT
CGTCAACAGGTTCGTCGAGCGTCGGACTCCGTCCTGCTCTGCGAGGGGCGGTTCCTGGTGGCGTGCGTGCGA
GCGGACACCCTGAAGCCACGTGCTATCCCCGAAACGTTGCGTGCGGCTTTTGCCGGAAGCCCGGATTCTTTT
TCAGCAGGAGATTAA
Translation:
MRAQHGGKPFQQRFRVYYEDTDAGGIVYYVNYLKFMERARTERLRALGFAQSQLVGDNLLFVVHSAEARYHA
PAKLDDELLVSAEVEELNRASLKFRQQVRRASDSVLLCEGRFLVACVRADTLKPRAIPETLRAAFAGSPDSF
SAGD*
AnnotationID:4575GeneID:4569
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 12:12:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0968, ybgC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0824
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0824, FcbC, Predicted thioesterase [General function prediction only]
         CD-Length = 137 residues,  94.2% aligned
         Score =  131 bits (331), Expect = 3e-32






   
Genomic Context:






   
Comment:


















    ReferenceID:9139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4569
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6934
                           PA0968_tr
                           translation of PA0968
                           148
                           99.99
                           99.99
                           0
                           751.0
     

     
     
184775
                           gb|AAG04357.1|AE004530_10
                           (AE004530) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           148
                           99.99
                           99.99
                           0
                           751.0
     

     
     
184776
                           gb|AAD49752.1|
                           (U39558) orf1 [Pseudomonas aeruginosa]
                           148
                           99.32
                           99.32
                           0
                           743.0
     

     
     
184778
                           gb|AAN66842.1|AE016313_1
                           (AE016778) conserved hypothetical protein TIGR00051 [Pseudomonas putida KT2440]
                           150
                           73.33
                           82.66
                           2
                           538.0
     

     
     
184779
                           emb|CAB50777.1|
                           (X74218) hypothetical protein [Pseudomonas putida]
                           150
                           73.33
                           82.66
                           2
                           538.0
     

     






      

          
GC ORFID: 47571How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0968Glimmer Score: 

          
Start: 355772Stop: 356218

          
Length: 447


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0968 translation of PA0968Homolog Bit Score 293.0

          
Other Homologs:  t_PA0968 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCGCAACACGGGGGAAAGCCGTTCCAGCAGCGTTTCCGGGTCTATTACGAGGACACGGATGCCGGC 
GGCATCGTCTATTACGTCAACTATCTCAAGTTCATGGAACGGGCTCGGACCGAGCGGCTGCGAGCTTTGGGG 
TTCGCCCAATCGCAACTGGTCGGCGACAATCTGCTGTTCGTCGTGCACTCCGCCGAGGCGCGTTACCACGCC 
CCGGCCAAGCTCGACGATGAACTGCTTGTCAGCGCCGAGGTCGAGGAGTTGAACCGGGCGAGCCTGAAGTTT 
CGTCAACAGGTTCGTCGAGCGTCGGACTCCGTCCTGCTCTGCGAGGGGCGGTTCCTGGTGGCGTGCGTGCGA 
GCGGACACCCTGAAGCCACGTGCTATCCCCGAAACGTTGCGTGCGGCTTTTGCCGGAAGCCCGGATTCTTTT 
TCAGCAGGAGATTAA