ViewGene
Locus Name:
GeneID:
Location:

GeneID:4568
TrivialName: PA14_08470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08470
PAO1 Ortholog Locus:PA0661
Sequence Length:423
Protein Length:140
Start: 725676
Stop: 725254
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04050.1|AE004501_2 (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/140 (99%), Positives = 140/140 (100%)
Sequence:
ATGTACCTGTGGCTCAAAGCCTTCCATATCATCGCCGTAGTCTGCTGGTTCGCCGGCCTGTTCTACCTGCCG
CGCCTGTTCGTCTACCACGCCATGAGCGAGGACCAGACCAGCCGGGAACGCTTCTGCGTCATGGAGCGCAAG
CTCTACCGGGGGATCATGATGCCCTCGATGCTCGCCACCCTGGTCCTTGGCCTCTGGATGCTCTATCTCACC
CCCGGCTGGCTGAGCCAAGGCTGGCTGCACGCCAAGCTGACCCTGGTGGTCCTGCTGATCGGCTACCACCAC
GCCTGCGGCGCCATGCTCAAGCGCTTCGCCCGCGGCGAGCCGGGGCGCAGCCATGTGTTCTACCGCTGGTTC
AACGAAGTGCCTGTACTGTTCCTGCTGCTGATCGTCCTACTGGTGGTGCTCAAACCTTTCTGA
Translation:
MYLWLKAFHIIAVVCWFAGLFYLPRLFVYHAMSEDQTSRERFCVMERKLYRGIMMPSMLATLVLGLWMLYLT
PGWLSQGWLHAKLTLVVLLIGYHHACGAMLKRFARGEPGRSHVFYRWFNEVPVLFLLLIVLLVVLKPF*
AnnotationID:4574GeneID:4568
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0661
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1981
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16447.1| (AL646071) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 140

 Score =  152 bits (385), Expect = 2e-37
 Identities = 76/143 (53%), Positives = 97/143 (67%), Gaps = 9/143 (6%)

>emb|CAE35663.1| (BX640448) putative conserved inner membrane protein [Bordetella
           bronchiseptica]
          Length = 156

 Score =  148 bits (373), Expect = 6e-36
 Identities = 70/140 (50%), Positives = 94/140 (67%), Gaps = 3/140 (2%)

>gb|AAD08519.1| (AE000647) conserved hypothetical integral membrane protein
           [Helicobacter pylori 26695]
          Length = 148

 Score =  136 bits (343), Expect = 2e-32
 Identities = 70/144 (48%), Positives = 94/144 (65%), Gaps = 8/144 (5%)






 
Structural Features:
COG1981, Predicted membrane protein
CD-Length = 149 residues,  96.0% aligned
Score =  175 bits (445), Expect = 2e-45
Identities = 87/144 (60%), Positives = 107/144 (74%), Gaps = 5/144 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9137




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26279




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33902




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4568_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4568
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6933
                           PA0661_tr
                           translation of PA0661
                           140
                           99.28
                           99.99
                           0
                           753.0
     

     
     
184739
                           gb|AAG04050.1|AE004501_2
                           (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           140
                           99.28
                           99.99
                           0
                           753.0
     

     
     
184740
                           gb|AAN66061.1|AE016234_14
                           (AE016775) conserved hypothetical protein TIGR00701 [Pseudomonas putida KT2440]
                           141
                           76.59
                           85.10
                           1
                           609.0
     

     
     
184741
                           gb|AAO54145.1|
                           (AE016858) conserved hypothetical protein TIGR00701 [Pseudomonas syringae pv. tomato str. DC3000]
                           142
                           72.53
                           85.91
                           2
                           584.0
     

     
     
184742
                           emb|CAD85667.1|
                           (BX321862) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           144
                           56.25
                           67.36
                           11
                           427.0
     

     






      

          
GC ORFID: 47570How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0661Glimmer Score: 

          
Start: 6527019Stop: 6526597

          
Length: 423


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0661 translation of PA0661Homolog Bit Score 294.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2396 (ORF: BLASTX 231.0), t_PA0661 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACCTGTGGCTCAAAGCCTTCCATATCATCGCCGTAGTCTGCTGGTTCGCCGGCCTGTTCTACCTGCCG 
CGCCTGTTCGTCTACCACGCCATGAGCGAGGACCAGACCAGCCGGGAACGCTTCTGCGTCATGGAGCGCAAG 
CTCTACCGGGGGATCATGATGCCCTCGATGCTCGCCACCCTGGTCCTTGGCCTCTGGATGCTCTATCTCACC 
CCCGGCTGGCTGAGCCAAGGCTGGCTGCACGCCAAGCTGACCCTGGTGGTCCTGCTGATCGGCTACCACCAC 
GCCTGCGGCGCCATGCTCAAGCGCTTCGCCCGCGGCGAGCCGGGGCGCAGCCATGTGTTCTACCGCTGGTTC 
AACGAAGTGCCTGTACTGTTCCTGCTGCTGATCGTCCTACTGGTGGTGCTCAAACCTTTCTGA