ViewGene

Locus Name:
GeneID:
Location:

GeneID:4567
TrivialName: PA14_03490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03490
PAO1 Ortholog Locus:PA0269
Sequence Length:438
Protein Length:145
Start: 319880
Stop: 320317
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03658.1|AE004465_4 (AE004465) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/145 (99%), Positives = 144/145 (99%)
Sequence:
ATGACCACCCGCCTCGAATGGGCCAAAGCCTCCCCCGACGCCTATGCCGCCATGCTCGGCCTGGAAAAGGCC
CTGGCCAAGGCCGGCCTGGAGCGCCCGTTGATCGAACTGGTCTACCTGCGTACTTCGCAGATCAACGGTTGC
GCTTACTGCGTGAACATGCATGCCAACGACGCGCGCAAGGCCGGCGAGACCGAGCAGCGTCTGCAAGCGCTC
TGCGTCTGGCAGGAAACCCCCTACTTCACCCCGCGCGAGCGCGCCGCCCTGGCCTGGACCGAGCAACTCGCC
CGCCTCAGTCAGGGTCCGTTGCCGCACGGCCTGCTCGACGAACTGCGCGAGCACTTCGACGACAAGGAGATC
GCCGAACTGACCCTGGCGGTCTCGGCCATCAACGCCTGGAACCGCTTCGGCGTCGGCATGGGCATGCAACCG
GAGTGA
Translation:
MTTRLEWAKASPDAYAAMLGLEKALAKAGLERPLIELVYLRTSQINGCAYCVNMHANDARKAGETEQRLQAL
CVWQETPYFTPRERAALAWTEQLARLSQGPLPHGLLDELREHFDDKEIAELTLAVSAINAWNRFGVGMGMQP
E*
AnnotationID:4573GeneID:4567
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:57
Gene Name:
Confidence Code:3
GeneProduct:putative decarboxylase
Cell Localization:()
Synonyms:PA0269
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02627
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam02627, CMD, Carboxymuconolactone decarboxylase family. 
CD-Length = 92 residues,  97.8% aligned
Score = 61.1 bits (148), Expect = 5e-11
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Genomic Context:
Comment:
ReferenceID:9135
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26277
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33614
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4567_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4567

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6932 PA0269_tr translation of PA0269 145 99.31 99.31 0 753.0
184707 gb|AAG03658.1|AE004465_4 (AE004465) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 145 99.31 99.31 0 753.0
184708 emb|CAE26558.1| (BX572596) conserved hypothetical protein [Rhodopseudomonas palustris CGA009] 155 49.03 61.93 10 378.0
184709 gb|AAQ59194.1| (AE016915) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 154 46.75 60.38 9 376.0
184717 emb|CAE41486.1| (BX640414) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 148 45.94 61.48 3 340.0
GC ORFID: 47569How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0269Glimmer Score:
Start: 6121221Stop: 6121658
Length: 438
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0269 translation of PA0269Homolog Bit Score 294.0
Other Homologs: t_PA0269 (ORF: GLIMMER)
GC ORF Sequence
ATGACCACCCGCCTCGAATGGGCCAAAGCCTCCCCCGACGCCTATGCCGCCATGCTCGGCCTGGAAAAGGCC
CTGGCCAAGGCCGGCCTGGAGCGCCCGTTGATCGAACTGGTCTACCTGCGTACTTCGCAGATCAACGGTTGC
GCTTACTGCGTGAACATGCATGCCAACGACGCGCGCAAGGCCGGCGAGACCGAGCAGCGTCTGCAAGCGCTC
TGCGTCTGGCAGGAAACCCCCTACTTCACCCCGCGCGAGCGCGCCGCCCTGGCCTGGACCGAGCAACTCGCC
CGCCTCAGTCAGGGTCCGTTGCCGCACGGCCTGCTCGACGAACTGCGCGAGCACTTCGACGACAAGGAGATC
GCCGAACTGACCCTGGCGGTCTCGGCCATCAACGCCTGGAACCGCTTCGGCGTCGGCATGGGCATGCAACCG
GAGTGA