ViewGene
Locus Name:
GeneID:
Location:

GeneID:4566
TrivialName: PA14_73290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73290
PAO1 Ortholog Locus:PA5558
Sequence Length:471
Protein Length:156
Start: 6526433
Stop: 6525963
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08943.1|AE004967_14 (AE004967) ATP synthase B chain [Pseudomonas aeruginosa PAO1]
Identities = 156/156 (100%), Positives = 156/156 (100%)
Sequence:
GTGAACATTAATGCAACCCTGATTGGCCAGTCCGTTGCGTTCTTCATCTTTGTGCTGTTCTGCATGAAGTTC
GTGTGGCCTCCGGTCATCGCGGCTCTGCAAGAGCGTCAGAAGAAGATCGCTGACGGCCTGGACGCTGCCAAC
CGCGCGGCTCGTGATCTGGAGCTGGCTCATGAGAAAGCGGGCCAGCAACTGCGCGAAGCCAAGGCTCAGGCA
GCCGAAATCGTCGAACAGGCGAAGAAACGCGCTAACCAGATCGTCGATGAAGCCCGCGACCAGGCCCGTACC
GAAGGCGAACGCCTGAAGGCCCAGGCCCAAGCGGAAATCGAACAGGAACTGAACAGCGTCAAGGACGCCCTG
CGTGCCCAAGTGGGTGCCCTGGCCGTCACCGGCGCAGAGAAGATCCTGGGTGCTTCGATCGACGCAAACGCG
CACGAGCAGCTGGTTTCCAAACTGGCAGCCGAGATCTAA
Translation:
MNINATLIGQSVAFFIFVLFCMKFVWPPVIAALQERQKKIADGLDAANRAARDLELAHEKAGQQLREAKAQA
AEIVEQAKKRANQIVDEARDQARTEGERLKAQAQAEIEQELNSVKDALRAQVGALAVTGAEKILGASIDANA
HEQLVSKLAAEI*
AnnotationID:4572GeneID:4566
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 08:08:41
Gene Name:atpF
Confidence Code:2
GeneProduct:ATP synthase B chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP synthase F0, B subunit
Functional Category Confidence Code:5
COGs:COG0711,pfam00430
Secondary Functional Category(ies):
EC Number:3.6.1.34
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70981.1|AE016742_10 (AE016794) ATP synthase F0, B subunit [Pseudomonas putida KT2440]
          Length = 156

 Score =  258 bits (660), Expect = 6e-69
 Identities = 135/156 (86%), Positives = 145/156 (92%)

>gb|AAO59016.1| (AE016876) ATP synthase F0, B subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 156

 Score =  256 bits (653), Expect = 4e-68
 Identities = 132/156 (84%), Positives = 144/156 (92%)

>dbj|BAC61336.1| (AP005083) ATP synthase F0, B subunit [Vibrio parahaemolyticus]
          Length = 156

 Score =  183 bits (465), Expect = 3e-46
 Identities = 88/156 (56%), Positives = 121/156 (77%)








 
Structural Features:
COG0711, AtpF, F0F1-type ATP synthase, subunit b 
[Energy production and conversion]
CD-Length = 161 residues,  95.0% aligned
Score = 91.5 bits (227), Expect = 4e-20
Identities = 66/153 (43%), Positives = 92/153 (60%)

pfam00430, ATP-synt_B, ATP synthase B/B' CF(0).
CD-Length = 132 residues, 100.0% aligned
Score = 76.8 bits (189), Expect = 1e-15
Identities = 52/132 (39%), Positives = 75/132 (56%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15126




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26275




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33341




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4566_cdd.html


    		




 
URL:

















    ReferenceID:35555




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35573




  
Author/Investigator(s):
        McCarn DF, Whitaker RA, Alam J, Vrba JM, Curtis SE.





  
Title:
        Genes encoding the alpha, gamma, delta, and four F0 subunits of ATP synthase constitute an operon in the cyanobacterium Anabaena sp. strain PCC 7120.




  
PubMed:
        2900236


MedLine:
        




    
Source:
J Bacteriol. 1988 Aug;170(8):3448-58.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2900236

















    ReferenceID:35574




  
Author/Investigator(s):
        Nielsen J, Hansen FG, Hoppe J, Friedl P, von Meyenburg K.





  
Title:
        The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli.




  
PubMed:
        6278247


MedLine:
        




    
Source:
Mol Gen Genet. 1981;184(1):33-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6278247

















    ReferenceID:35578




  
Author/Investigator(s):
        Pancic PG, Strotmann H, Kowallik KV.





  
Title:
        Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement.




  
PubMed:
        1532839


MedLine:
        




    
Source:
J Mol Biol. 1992 Mar 20;224(2):529-36.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1532839









           
Homologs By Global Alignment 

           

       



     
Gene ID:4566
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6931
                           PA5558_tr
                           translation of PA5558
                           156
                           99.99
                           99.99
                           0
                           753.0
     

     
     
184660
                           gb|AAG08943.1|AE004967_14
                           (AE004967) ATP synthase B chain [Pseudomonas aeruginosa PAO1]
                           156
                           99.35
                           99.99
                           0
                           750.0
     

     
     
184661
                           gb|AAN70981.1|AE016742_10
                           (AE016794) ATP synthase F0, B subunit [Pseudomonas putida KT2440]
                           156
                           85.89
                           92.94
                           0
                           656.0
     

     
     
184662
                           gb|AAO59016.1|
                           (AE016876) ATP synthase F0, B subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           156
                           83.97
                           92.30
                           0
                           649.0
     

     
     
184667
                           gb|AAN57710.1|AE015907_8
                           (AE015907) ATP synthase F0, B subunit [Shewanella oneidensis MR-1]
                           156
                           60.89
                           74.35
                           0
                           456.0
     

     






      

          
GC ORFID: 47568How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5558Glimmer Score: 

          
Start: 5790122Stop: 5789652

          
Length: 471


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5558 translation of PA5558Homolog Bit Score 294.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4128 (ORF: BLASTX 259.0), t_PA5558 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACATTAATGCAACCCTGATTGGCCAGTCCGTTGCGTTCTTCATCTTTGTGCTGTTCTGCATGAAGTTC 
GTGTGGCCTCCGGTCATCGCGGCTCTGCAAGAGCGTCAGAAGAAGATCGCTGACGGCCTGGACGCTGCCAAC 
CGCGCGGCTCGTGATCTGGAGCTGGCTCATGAGAAAGCGGGCCAGCAACTGCGCGAAGCCAAGGCTCAGGCA 
GCCGAAATCGTCGAACAGGCGAAGAAACGCGCTAACCAGATCGTCGATGAAGCCCGCGACCAGGCCCGTACC 
GAAGGCGAACGCCTGAAGGCCCAGGCCCAAGCGGAAATCGAACAGGAACTGAACAGCGTCAAGGACGCCCTG 
CGTGCCCAAGTGGGTGCCCTGGCCGTCACCGGCGCAGAGAAGATCCTGGGTGCTTCGATCGACGCAAACGCG 
CACGAGCAGCTGGTTTCCAAACTGGCAGCCGAGATCTAA