ViewGene
Locus Name:
GeneID:
Location:

GeneID:4565
TrivialName: PA14_57690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57690
PAO1 Ortholog Locus:PA4441
Sequence Length:447
Protein Length:148
Start: 5137765
Stop: 5138211
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07829.1|AE004858_7 (AE004858) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/148 (100%), Positives = 148/148 (100%)
Sequence:
GTGGAACAGTCGCTCACCGCCTGGCTGCTGCCGGCCCTCGCCCTGGTCGCCGGGGTCGCCATCGGTTTTCTG
ATCGCCCGCCTGCTGCCCAACGCCGCGCCGAACAAGGTGCAACGCCAGATGGACGACCTGCAGGACCGCTTC
GACAGCTATCAGCGCGAAGTCGTGACCCATTTCAACACCACCGCCAGCCTCGTGAAGAAGCTGACCCAGAGC
TACCAGGACGTGCAGGAGCACCTCTCCGACGGCGCCCAGCGCCTGGCCCTGGACGAACAGACCCGCCAGCGC
CTGCTGGCTGCGCTGCATGCCGACGAGGCCTATCCGGCCGAGCGCCGCGAGCGCCTGACTCCGCCGGCCTCC
GGCGAAGTGCCGAAGGACTATGCGCCGAAGAGCCCGGACAGCCCCGGCACCCTCGACGCCACCTACGGCCTG
AAAGGCAAGTACTGA
Translation:
MEQSLTAWLLPALALVAGVAIGFLIARLLPNAAPNKVQRQMDDLQDRFDSYQREVVTHFNTTASLVKKLTQS
YQDVQEHLSDGAQRLALDEQTRQRLLAALHADEAYPAERRERLTPPASGEVPKDYAPKSPDSPGTLDATYGL
KGKY*
AnnotationID:4571GeneID:4565
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 21:09:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4441
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15124




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26273




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31480




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4565_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4565
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6930
                           PA4441_tr
                           translation of PA4441
                           148
                           99.99
                           99.99
                           0
                           753.0
     

     
     
184657
                           gb|AAG07829.1|AE004858_7
                           (AE004858) hypothetical protein PA4441 [Pseudomonas aeruginosa PAO1]
                           148
                           99.32
                           99.99
                           0
                           750.0
     

     
     
184659
                           gb|AAN66933.1|AE016321_9
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           149
                           69.12
                           81.87
                           5
                           526.0
     

     
     
184658
                           gb|AAO57880.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           150
                           68.66
                           82.00
                           5
                           531.0
     

     






      

          
GC ORFID: 47567How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4441Glimmer Score: 

          
Start: 4401444Stop: 4401890

          
Length: 447


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4441 translation of PA4441Homolog Bit Score 294.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2017 (ORF: BLASTX 211.0), t_PA4441 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAACAGTCGCTCACCGCCTGGCTGCTGCCGGCCCTCGCCCTGGTCGCCGGGGTCGCCATCGGTTTTCTG 
ATCGCCCGCCTGCTGCCCAACGCCGCGCCGAACAAGGTGCAACGCCAGATGGACGACCTGCAGGACCGCTTC 
GACAGCTATCAGCGCGAAGTCGTGACCCATTTCAACACCACCGCCAGCCTCGTGAAGAAGCTGACCCAGAGC 
TACCAGGACGTGCAGGAGCACCTCTCCGACGGCGCCCAGCGCCTGGCCCTGGACGAACAGACCCGCCAGCGC 
CTGCTGGCTGCGCTGCATGCCGACGAGGCCTATCCGGCCGAGCGCCGCGAGCGCCTGACTCCGCCGGCCTCC 
GGCGAAGTGCCGAAGGACTATGCGCCGAAGAGCCCGGACAGCCCCGGCACCCTCGACGCCACCTACGGCCTG 
AAAGGCAAGTACTGA